Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L21_leader - Thermotogales

Properties
Regulator type: RNA regulatory element
Name: L21_leader
RFAM: RF00559
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Thermotogae
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Thermotoga maritima MSB8
Thermotoga sp. RQ2
Thermotoga neapolitana DSM 4359 6 1
Thermotoga petrophila RKU-1
Thermotoga naphthophila RKU-10
Thermotoga lettingae TMO 5 1
Thermosipho africanus TCF52B 6 1
Thermosipho melanesiensis BI429 6 1
Fervidobacterium nodosum Rt17-B1
Petrotoga mobilis SJ95
Thermotogales bacterium TBF 19.5.1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplU
 
Thermotoga maritima MSB8

Gene: TM1458: LSU ribosomal protein L21p
 
Thermotoga sp. RQ2

Gene: TRQ2_1350: LSU ribosomal protein L21p
*
Thermotoga neapolitana DSM 4359

Site:
position = -7
score = 19.27
sequence = GCTTGAAGTGCGTCG...

Gene: CTN_1035: LSU ribosomal protein L21p
 
Thermotoga petrophila RKU-1

Gene: Tpet_1336: LSU ribosomal protein L21p
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1353: LSU ribosomal protein L21p
*
Thermotoga lettingae TMO

Site:
position = -95
score = 23.8
sequence = AGTATTTACACAAGC...

Gene: Tlet_1979: LSU ribosomal protein L21p
*
Thermosipho africanus TCF52B

Site:
position = -98
score = 19.34
sequence = TCTTAGGTTATAGTC...

Gene: THA_1316: LSU ribosomal protein L21p
*
Thermosipho melanesiensis BI429

Site:
position = -95
score = 16.46
sequence = CTTAAGGTTATAGTC...

Gene: Tmel_1036: LSU ribosomal protein L21p
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0438: LSU ribosomal protein L21p
 
Petrotoga mobilis SJ95

Gene: Pmob_0805: LSU ribosomal protein L21p
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0338: LSU ribosomal protein L21p
LSU ribosomal protein L21p
ysxB
 
Thermotoga maritima MSB8

Gene: TM1457: FIG139598: Potential ribosomal protein
 
Thermotoga sp. RQ2

Gene: TRQ2_1349: FIG139598: Potential ribosomal protein
 
Thermotoga neapolitana DSM 4359

Gene: CTN_1036: FIG139598: Potential ribosomal protein
 
Thermotoga petrophila RKU-1

Gene: Tpet_1337: FIG139598: Potential ribosomal protein
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1354: FIG139598: Potential ribosomal protein
 
Thermotoga lettingae TMO

Gene: Tlet_1978: FIG139598: Potential ribosomal protein
 
Thermosipho africanus TCF52B

Gene: THA_1315: FIG139598: Potential ribosomal protein
 
Thermosipho melanesiensis BI429

Gene: Tmel_1035: FIG139598: Potential ribosomal protein
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0437: FIG139598: Potential ribosomal protein
 
Petrotoga mobilis SJ95

Gene: Pmob_0804: FIG139598: Potential ribosomal protein
 
Thermotogales bacterium TBF 19.5.1
FIG139598: Potential ribosomal protein
rpmA
 
Thermotoga maritima MSB8

Gene: TM1456: LSU ribosomal protein L27p
 
Thermotoga sp. RQ2

Gene: TRQ2_1348: LSU ribosomal protein L27p
 
Thermotoga neapolitana DSM 4359

Gene: CTN_1037: LSU ribosomal protein L27p
 
Thermotoga petrophila RKU-1

Gene: Tpet_1338: LSU ribosomal protein L27p
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1355: LSU ribosomal protein L27p
 
Thermotoga lettingae TMO

Gene: Tlet_1977: LSU ribosomal protein L27p
 
Thermosipho africanus TCF52B

Gene: THA_1314: LSU ribosomal protein L27p
 
Thermosipho melanesiensis BI429

Gene: Tmel_1034: LSU ribosomal protein L27p
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0436: LSU ribosomal protein L27p
 
Petrotoga mobilis SJ95

Gene: Pmob_0803: LSU ribosomal protein L27p
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0339: LSU ribosomal protein L27p
LSU ribosomal protein L27p
ribU
 
Thermotoga maritima MSB8

Gene: TM1455: Substrate-specific component RibU of riboflavin ECF transporter
 
Thermotoga sp. RQ2

Gene: TRQ2_1347: Substrate-specific component RibU of riboflavin ECF transporter
 
Thermotoga neapolitana DSM 4359

Gene: CTN_1038: Substrate-specific component RibU of riboflavin ECF transporter
 
Thermotoga petrophila RKU-1

Gene: Tpet_1339: Substrate-specific component RibU of riboflavin ECF transporter
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1356: Substrate-specific component RibU of riboflavin ECF transporter
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B

Gene: THA_1313: Substrate-specific component RibU of riboflavin ECF transporter
 
Thermosipho melanesiensis BI429

Gene: Tmel_1033: Substrate-specific component RibU of riboflavin ECF transporter
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0435: Substrate-specific component RibU of riboflavin ECF transporter
 
Petrotoga mobilis SJ95

Gene: Pmob_0802: Substrate-specific component RibU of riboflavin ECF transporter
 
Thermotogales bacterium TBF 19.5.1
Substrate-specific component RibU of riboflavin ECF transporter
rplM
 
Thermotoga maritima MSB8

Gene: TM1454: LSU ribosomal protein L13p (L13Ae)
 
Thermotoga sp. RQ2

Gene: TRQ2_1346: LSU ribosomal protein L13p (L13Ae)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_1039: LSU ribosomal protein L13p (L13Ae)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1340: LSU ribosomal protein L13p (L13Ae)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1357: LSU ribosomal protein L13p (L13Ae)
 
Thermotoga lettingae TMO

Gene: Tlet_1976: LSU ribosomal protein L13p (L13Ae)
 
Thermosipho africanus TCF52B

Gene: THA_1312: LSU ribosomal protein L13p (L13Ae)
 
Thermosipho melanesiensis BI429

Gene: Tmel_1032: LSU ribosomal protein L13p (L13Ae)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0434: LSU ribosomal protein L13p (L13Ae)
 
Petrotoga mobilis SJ95

Gene: Pmob_0801: LSU ribosomal protein L13p (L13Ae)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0340: LSU ribosomal protein L13p (L13Ae)
LSU ribosomal protein L13p (L13Ae)
rpsI
 
Thermotoga maritima MSB8

Gene: TM1453: SSU ribosomal protein S9p (S16e)
 
Thermotoga sp. RQ2

Gene: TRQ2_1345: SSU ribosomal protein S9p (S16e)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_1040: SSU ribosomal protein S9p (S16e)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1341: SSU ribosomal protein S9p (S16e)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1358: SSU ribosomal protein S9p (S16e)
 
Thermotoga lettingae TMO

Gene: Tlet_1975: SSU ribosomal protein S9p (S16e)
 
Thermosipho africanus TCF52B

Gene: THA_1311: SSU ribosomal protein S9p (S16e)
 
Thermosipho melanesiensis BI429

Gene: Tmel_1031: SSU ribosomal protein S9p (S16e)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0433: SSU ribosomal protein S9p (S16e)
 
Petrotoga mobilis SJ95

Gene: Pmob_0800: SSU ribosomal protein S9p (S16e)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0341: SSU ribosomal protein S9p (S16e)
SSU ribosomal protein S9p (S16e)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD