Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L21_leader - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: L21_leader
RFAM: RF00559
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315
Staphylococcus capitis SK14 3 1
Staphylococcus epidermidis ATCC 12228 3 1
Staphylococcus carnosus subsp. carnosus TM300 3 1
Staphylococcus haemolyticus JCSC1435 3 1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 3 1
Macrococcus caseolyticus JCSC5402 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplU
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1473: LSU ribosomal protein L21p
*
Staphylococcus capitis SK14

Site:
position = -138
score = 31.93
sequence = CATACAACCGCTCAA...

Gene: STACA0001_2373: LSU ribosomal protein L21p
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -90
score = 56.36
sequence = AAGCTACATACAACC...

Gene: SE1330: LSU ribosomal protein L21p
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -92
score = 53.85
sequence = TAGCTACATACAACC...

Gene: Sca_1258a: LSU ribosomal protein L21p
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -90
score = 55.18
sequence = GCTACATACAACCGC...

Gene: SH1273: LSU ribosomal protein L21p
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -86
score = 52.6
sequence = GCTACATACAACCGC...

Gene: SSP1112: LSU ribosomal protein L21p
*
Macrococcus caseolyticus JCSC5402

Site:
position = -86
score = 47.53
sequence = AAGCTACATACAACC...

Gene: MCCL_1285: LSU ribosomal protein L21p
LSU ribosomal protein L21p
ysxB
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1472: FIG139598: Potential ribosomal protein
 
Staphylococcus capitis SK14

Gene: STACA0001_2374: FIG139598: Potential ribosomal protein
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1329: FIG139598: Potential ribosomal protein
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1257: FIG139598: Potential ribosomal protein
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1274: FIG139598: Potential ribosomal protein
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1113: FIG139598: Potential ribosomal protein
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1284: FIG139598: Potential ribosomal protein
FIG139598: Potential ribosomal protein
rpmA
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1471: LSU ribosomal protein L27p
 
Staphylococcus capitis SK14

Gene: STACA0001_2375: LSU ribosomal protein L27p
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1328: LSU ribosomal protein L27p
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1256: LSU ribosomal protein L27p
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1275: LSU ribosomal protein L27p
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1114: LSU ribosomal protein L27p
 
Macrococcus caseolyticus JCSC5402
LSU ribosomal protein L27p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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