Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L20_leader - Bacillales

Properties
Regulator type: RNA regulatory element
Name: L20_leader
RFAM: RF00558
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 1
Bacillus amyloliquefaciens FZB42 3 1
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13 3 1
Anoxybacillus flavithermus WK1 3 1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579 3 1
Bacillus halodurans C-125 3 1
Bacillus clausii KSM-K16 3 1
Oceanobacillus iheyensis HTE831 3 1
Paenibacillus sp. JDR-2 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
infC
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -190
score = 85.74
sequence = AAATCACAAGCAGAA...

Gene: BSU28870: Translation initiation factor 3
*
Bacillus amyloliquefaciens FZB42

Site:
position = -208
score = 80.98
sequence = AAATCACAAGCAGAG...

Gene: RBAM_025930: Translation initiation factor 3
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -84
score = 79.87
sequence = TATCAACAAGCAGAA...

Gene: BLi03035: Translation initiation factor 3
*
Anoxybacillus flavithermus WK1

Site:
position = -148
score = 72.9
sequence = GAAACAAGCAGAAGC...

Gene: Aflv_0522: Translation initiation factor 3
 
Geobacillus kaustophilus HTA426

Gene: GK2718: Translation initiation factor 3
*
Bacillus cereus ATCC 14579

Site:
position = -185
score = 88.76
sequence = GTGGAACAAGTAGAA...

Gene: BC4575: Translation initiation factor 3
*
Bacillus halodurans C-125

Site:
position = -156
score = 74.53
sequence = TCAAAGCAAGAAGGA...

Gene: BH3140: Translation initiation factor 3
*
Bacillus clausii KSM-K16

Site:
position = -187
score = 80.71
sequence = ATAGAGCAAGAAGAA...

Gene: ABC2689: Translation initiation factor 3
*
Oceanobacillus iheyensis HTE831

Site:
position = -197
score = 79.96
sequence = CTAAGACAAGTAGAA...

Gene: OB2152: Translation initiation factor 3
*
Paenibacillus sp. JDR-2

Site:
position = -134
score = 39.43
sequence = TGCACAAGCAGAAGC...

Gene: Pjdr2_1288: Translation initiation factor 3
Translation initiation factor 3
rpmI
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28860: LSU ribosomal protein L35p
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025920: LSU ribosomal protein L35p
 
Bacillus pumilus SAFR-032

Gene: BPUM_2531: LSU ribosomal protein L35p
 
Bacillus licheniformis DSM 13

Gene: BLi03034: LSU ribosomal protein L35p
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0523: LSU ribosomal protein L35p
 
Geobacillus kaustophilus HTA426

Gene: GK2717: LSU ribosomal protein L35p
 
Bacillus cereus ATCC 14579

Gene: BC4574: LSU ribosomal protein L35p
 
Bacillus halodurans C-125

Gene: BH3139: LSU ribosomal protein L35p
 
Bacillus clausii KSM-K16

Gene: ABC2688: LSU ribosomal protein L35p
 
Oceanobacillus iheyensis HTE831

Gene: OB2151: LSU ribosomal protein L35p
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1289: LSU ribosomal protein L35p
LSU ribosomal protein L35p
rplT
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28850: LSU ribosomal protein L20p
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025910: LSU ribosomal protein L20p
 
Bacillus pumilus SAFR-032

Gene: BPUM_2530: LSU ribosomal protein L20p
 
Bacillus licheniformis DSM 13

Gene: BLi03033: LSU ribosomal protein L20p
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0524: LSU ribosomal protein L20p
 
Geobacillus kaustophilus HTA426

Gene: GK2716: LSU ribosomal protein L20p
 
Bacillus cereus ATCC 14579

Gene: BC4573: LSU ribosomal protein L20p
 
Bacillus halodurans C-125

Gene: BH3138: LSU ribosomal protein L20p
 
Bacillus clausii KSM-K16

Gene: ABC2687: LSU ribosomal protein L20p
 
Oceanobacillus iheyensis HTE831

Gene: OB2150: LSU ribosomal protein L20p
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1290: LSU ribosomal protein L20p
LSU ribosomal protein L20p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD