Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L20_leader - Thermotogales

Properties
Regulator type: RNA regulatory element
Name: L20_leader
RFAM: RF00558
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Thermotogae
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Thermotoga maritima MSB8 3 1
Thermotoga sp. RQ2 3 1
Thermotoga neapolitana DSM 4359 3 1
Thermotoga petrophila RKU-1 3 1
Thermotoga naphthophila RKU-10 3 1
Thermotoga lettingae TMO 3 1
Thermosipho africanus TCF52B 3 1
Thermosipho melanesiensis BI429 3 1
Fervidobacterium nodosum Rt17-B1 3 1
Petrotoga mobilis SJ95 3 1
Thermotogales bacterium TBF 19.5.1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
infC
*
Thermotoga maritima MSB8

Site:
position = -213
score = 45.97
sequence = AAAGCAAGTGGAGGC...

Gene: TM1590: Translation initiation factor 3
*
Thermotoga sp. RQ2

Site:
position = -213
score = 45.97
sequence = AAAGCAAGTGGAGGC...

Gene: TRQ2_1253: Translation initiation factor 3
*
Thermotoga neapolitana DSM 4359

Site:
position = -115
score = 44.17
sequence = TAAAAGCAAGTGGAG...

Gene: CTN_0869: Translation initiation factor 3
*
Thermotoga petrophila RKU-1

Site:
position = -197
score = 44.06
sequence = AAAAAGCAAGTGGAG...

Gene: Tpet_1203: Translation initiation factor 3
*
Thermotoga naphthophila RKU-10

Site:
position = -137
score = 45.97
sequence = AAAAAGCAAGTGGAG...

Gene: Tnap_1218: Translation initiation factor 3
*
Thermotoga lettingae TMO

Site:
position = -84
score = 31.99
sequence = AGAGCAAGAGGAAGC...

Gene: Tlet_1347: Translation initiation factor 3
*
Thermosipho africanus TCF52B

Site:
position = -233
score = 46.43
sequence = TATAGTAAAGAGGAA...

Gene: THA_1200: Translation initiation factor 3
*
Thermosipho melanesiensis BI429

Site:
position = -225
score = 38.4
sequence = TTTTGAAGAGGAAGC...

Gene: Tmel_0923: Translation initiation factor 3
*
Fervidobacterium nodosum Rt17-B1

Site:
position = -172
score = 44.15
sequence = GTAAAAAGTGGAGGC...

Gene: Fnod_0660: Translation initiation factor 3
*
Petrotoga mobilis SJ95

Site:
position = -177
score = 27.84
sequence = AGGTAAAGAGGAAGT...

Gene: Pmob_0709: Translation initiation factor 3
 
Thermotogales bacterium TBF 19.5.1
Translation initiation factor 3
rpmI
 
Thermotoga maritima MSB8

Gene: TM1591: LSU ribosomal protein L35p
 
Thermotoga sp. RQ2

Gene: TRQ2_1254: LSU ribosomal protein L35p
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0868: LSU ribosomal protein L35p
 
Thermotoga petrophila RKU-1

Gene: Tpet_1202: LSU ribosomal protein L35p
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1217: LSU ribosomal protein L35p
 
Thermotoga lettingae TMO

Gene: Tlet_1348: LSU ribosomal protein L35p
 
Thermosipho africanus TCF52B

Gene: THA_1199: LSU ribosomal protein L35p
 
Thermosipho melanesiensis BI429

Gene: Tmel_0924: LSU ribosomal protein L35p
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0661: LSU ribosomal protein L35p
 
Petrotoga mobilis SJ95

Gene: Pmob_0710: LSU ribosomal protein L35p
 
Thermotogales bacterium TBF 19.5.1
LSU ribosomal protein L35p
rplT
 
Thermotoga maritima MSB8

Gene: TM1592: LSU ribosomal protein L20p
 
Thermotoga sp. RQ2

Gene: TRQ2_1255: LSU ribosomal protein L20p
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0867: LSU ribosomal protein L20p
 
Thermotoga petrophila RKU-1

Gene: Tpet_1201: LSU ribosomal protein L20p
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1216: LSU ribosomal protein L20p
 
Thermotoga lettingae TMO

Gene: Tlet_1349: LSU ribosomal protein L20p
 
Thermosipho africanus TCF52B

Gene: THA_1198: LSU ribosomal protein L20p
 
Thermosipho melanesiensis BI429

Gene: Tmel_0925: LSU ribosomal protein L20p
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0662: LSU ribosomal protein L20p
 
Petrotoga mobilis SJ95

Gene: Pmob_0711: LSU ribosomal protein L20p
 
Thermotogales bacterium TBF 19.5.1
LSU ribosomal protein L20p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD