Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L20_leader - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: L20_leader
RFAM: RF00558
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315 3 1
Staphylococcus capitis SK14 3 1
Staphylococcus epidermidis ATCC 12228 3 1
Staphylococcus carnosus subsp. carnosus TM300 3 1
Staphylococcus haemolyticus JCSC1435 3 1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 3 1
Macrococcus caseolyticus JCSC5402 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
infC
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -164
score = 86.03
sequence = ACGAACCAAGTAGAA...

Gene: SA1504: Translation initiation factor 3
*
Staphylococcus capitis SK14

Site:
position = -150
score = 81.61
sequence = GAACCAAGTAGAAGC...

Gene: STACA0001_2347: Translation initiation factor 3
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -151
score = 79.25
sequence = ACGAACCAAGTAGAA...

Gene: SE1355: Translation initiation factor 3
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -163
score = 74.02
sequence = ACGAACCAAGTAGAA...

Gene: Sca_1286: Translation initiation factor 3
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -83
score = 79.77
sequence = GTACCAAGTAGAAAC...

Gene: SH1245: Translation initiation factor 3
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -152
score = 86.2
sequence = GAACCAAGTAGAAGC...

Gene: SSP1084: Translation initiation factor 3
*
Macrococcus caseolyticus JCSC5402

Site:
position = -144
score = 69.56
sequence = AACGGACAAGTAGAA...

Gene: MCCL_1345: Translation initiation factor 3
Translation initiation factor 3
rpmI
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1503: LSU ribosomal protein L35p
 
Staphylococcus capitis SK14

Gene: STACA0001_2348: LSU ribosomal protein L35p
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1354: LSU ribosomal protein L35p
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1285: LSU ribosomal protein L35p
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1246: LSU ribosomal protein L35p
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1085: LSU ribosomal protein L35p
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1344: LSU ribosomal protein L35p
LSU ribosomal protein L35p
rplT
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1502: LSU ribosomal protein L20p
 
Staphylococcus capitis SK14

Gene: STACA0001_2349: LSU ribosomal protein L20p
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1353: LSU ribosomal protein L20p
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1284: LSU ribosomal protein L20p
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1247: LSU ribosomal protein L20p
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1086: LSU ribosomal protein L20p
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1343: LSU ribosomal protein L20p
LSU ribosomal protein L20p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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