Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L19_leader - Bacillales

Properties
Regulator type: RNA regulatory element
Name: L19_leader
RFAM: RF00556
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 1 1
Bacillus amyloliquefaciens FZB42 1 1
Bacillus pumilus SAFR-032 1 1
Bacillus licheniformis DSM 13 1 1
Anoxybacillus flavithermus WK1 1 1
Geobacillus kaustophilus HTA426 1 1
Bacillus cereus ATCC 14579 1 1
Bacillus halodurans C-125 1 1
Bacillus clausii KSM-K16 1 1
Oceanobacillus iheyensis HTE831 1 1
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplS
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -51
score = 42.44
sequence = CGATGTTCCGCTGTG...

Gene: BSU16040: LSU ribosomal protein L19p
*
Bacillus amyloliquefaciens FZB42

Site:
position = -61
score = 39.29
sequence = CGATGTTCCGCTGTG...

Gene: RBAM_015870: LSU ribosomal protein L19p
*
Bacillus pumilus SAFR-032

Site:
position = -60
score = 33.16
sequence = CGATGTTCCGCTGCA...

Gene: BPUM_1502: LSU ribosomal protein L19p
*
Bacillus licheniformis DSM 13

Site:
position = -60
score = 43.73
sequence = CGATGTTCCGCTGTG...

Gene: BLi01824: LSU ribosomal protein L19p
*
Anoxybacillus flavithermus WK1

Site:
position = -36
score = 35.88
sequence = AACGATGTTCCGCTG...

Gene: Aflv_1759: LSU ribosomal protein L19p
*
Geobacillus kaustophilus HTA426

Site:
position = -58
score = 43.04
sequence = CGATGTTCCGCTGCA...

Gene: GK1202: LSU ribosomal protein L19p
*
Bacillus cereus ATCC 14579

Site:
position = -65
score = 40.06
sequence = AACGATGTTCCGCTG...

Gene: BC3838: LSU ribosomal protein L19p
*
Bacillus halodurans C-125

Site:
position = -66
score = 46.36
sequence = TACGATGTTCCGCTG...

Gene: BH2478: LSU ribosomal protein L19p
*
Bacillus clausii KSM-K16

Site:
position = -61
score = 39.32
sequence = TACGATATTCCGCTG...

Gene: ABC2287: LSU ribosomal protein L19p
*
Oceanobacillus iheyensis HTE831

Site:
position = -57
score = 37.85
sequence = CGATGTTCCGCTGTC...

Gene: OB1537: LSU ribosomal protein L19p
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3477: LSU ribosomal protein L19p
LSU ribosomal protein L19p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD