Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L13_leader - Bacillales

Properties
Regulator type: RNA regulatory element
Name: L13_leader
RFAM: RF00555
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 2 1
Bacillus amyloliquefaciens FZB42 2 1
Bacillus pumilus SAFR-032 2 1
Bacillus licheniformis DSM 13 2 1
Anoxybacillus flavithermus WK1 2 1
Geobacillus kaustophilus HTA426 2 1
Bacillus cereus ATCC 14579 2 1
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831 2 1
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplM
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -104
score = 55.83
sequence = GTATGTATTTCAACC...

Gene: BSU01490: 50S ribosomal protein L13
*
Bacillus amyloliquefaciens FZB42

Site:
position = -104
score = 55.83
sequence = GTATGTATTTCAACC...

Gene: RBAM_001740: 50S ribosomal protein L13
*
Bacillus pumilus SAFR-032

Site:
position = -111
score = 48.12
sequence = GTATGTATTTCAACC...

Gene: BPUM_0136: 50S ribosomal protein L13
*
Bacillus licheniformis DSM 13

Site:
position = -105
score = 60.8
sequence = GTATGTATTTCAACC...

Gene: BLi00167: 50S ribosomal protein L13
*
Anoxybacillus flavithermus WK1

Site:
position = -91
score = 44.8
sequence = GTATGTATTTTAAAC...

Gene: Aflv_0138: 50S ribosomal protein L13
*
Geobacillus kaustophilus HTA426

Site:
position = -94
score = 27.42
sequence = GCATGTATTTTCCAC...

Gene: GK0139: 50S ribosomal protein L13
*
Bacillus cereus ATCC 14579

Site:
position = -97
score = 36.42
sequence = GTATTGTTTCTAAAA...

Gene: BC0164: 50S ribosomal protein L13
 
Bacillus halodurans C-125

Gene: BH0168: 50S ribosomal protein L13
 
Bacillus clausii KSM-K16

Gene: ABC0183: 50S ribosomal protein L13
*
Oceanobacillus iheyensis HTE831

Site:
position = -106
score = 41.93
sequence = GCATTTTATTTCTAA...

Gene: OB0151: 50S ribosomal protein L13
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_5649: 50S ribosomal protein L13
50S ribosomal protein L13
rpsI
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU01500: SSU ribosomal protein S9p (S16e)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_001750: SSU ribosomal protein S9p (S16e)
 
Bacillus pumilus SAFR-032

Gene: BPUM_0137: SSU ribosomal protein S9p (S16e)
 
Bacillus licheniformis DSM 13

Gene: BLi00168: SSU ribosomal protein S9p (S16e)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0139: SSU ribosomal protein S9p (S16e)
 
Geobacillus kaustophilus HTA426

Gene: GK0140: SSU ribosomal protein S9p (S16e)
 
Bacillus cereus ATCC 14579

Gene: BC0165: SSU ribosomal protein S9p (S16e)
 
Bacillus halodurans C-125

Gene: BH0169: SSU ribosomal protein S9p (S16e)
 
Bacillus clausii KSM-K16

Gene: ABC0184: SSU ribosomal protein S9p (S16e)
 
Oceanobacillus iheyensis HTE831

Gene: OB0152: SSU ribosomal protein S9p (S16e)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_5648: SSU ribosomal protein S9p (S16e)
SSU ribosomal protein S9p (S16e)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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