Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L13_leader - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: L13_leader
RFAM: RF00555
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315 2 1
Staphylococcus capitis SK14 2 1
Staphylococcus epidermidis ATCC 12228 2 1
Staphylococcus carnosus subsp. carnosus TM300 2 1
Staphylococcus haemolyticus JCSC1435 2 1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 2 1
Macrococcus caseolyticus JCSC5402 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplM
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -198
score = 57.0
sequence = CGGTATTGTTTTATA...

Gene: SA2017: LSU ribosomal protein L13p (L13Ae)
*
Staphylococcus capitis SK14

Site:
position = -211
score = 55.05
sequence = GTTTTATATCACCCC...

Gene: STACA0001_1277: LSU ribosomal protein L13p (L13Ae)
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -214
score = 55.9
sequence = TTGTTTTATATCACC...

Gene: SE1791: LSU ribosomal protein L13p (L13Ae)
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -173
score = 52.06
sequence = CGGTATTGTTTTATA...

Gene: Sca_1703: LSU ribosomal protein L13p (L13Ae)
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -209
score = 51.61
sequence = GTATTGTTTTATATC...

Gene: SH0835: LSU ribosomal protein L13p (L13Ae)
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -161
score = 50.17
sequence = GTATTGTTTTATATC...

Gene: SSP0695: LSU ribosomal protein L13p (L13Ae)
*
Macrococcus caseolyticus JCSC5402

Site:
position = -106
score = 41.35
sequence = GTATTGTTTAATATC...

Gene: MCCL_0227: LSU ribosomal protein L13p (L13Ae)
LSU ribosomal protein L13p (L13Ae)
rpsI
 
Staphylococcus aureus subsp. aureus N315

Gene: SA2016: SSU ribosomal protein S9p (S16e)
 
Staphylococcus capitis SK14

Gene: STACA0001_1278: SSU ribosomal protein S9p (S16e)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1790: SSU ribosomal protein S9p (S16e)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1702: SSU ribosomal protein S9p (S16e)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH0836: SSU ribosomal protein S9p (S16e)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP0696: SSU ribosomal protein S9p (S16e)
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_0228: SSU ribosomal protein S9p (S16e)
SSU ribosomal protein S9p (S16e)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD