Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L10_leader - Cyanobacteria

Properties
Regulator type: RNA regulatory element
Name: L10_leader
RFAM: RF00557
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Cyanobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Synechococcus sp. PCC 7002 2 1
Synechocystis sp. PCC 6803 2 1
Cyanothece sp. ATCC 51142 2 1
Cyanothece sp. PCC 8801 2 1
Cyanothece sp. PCC 7425 2 1
Microcystis aeruginosa NIES-843 1 1
Nostoc sp. PCC 7120 2 1
Trichodesmium erythraeum IMS101
Synechococcus elongatus PCC 7942 2 1
Prochlorococcus marinus str. MIT 9313
Synechococcus sp. JA-3-3Ab 2 1
Synechococcus sp. WH 8102
Gloeobacter violaceus PCC 7421 2 1
Thermosynechococcus elongatus BP-1 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplJ
*
Synechococcus sp. PCC 7002

Site:
position = -193
score = 62.39
sequence = TAAATAGATTTTATT...

Gene: SYNPCC7002_A1027: 50S ribosomal protein L10
*
Synechocystis sp. PCC 6803

Site:
position = -213
score = 66.46
sequence = ATTTATTTAACTGGC...

Gene: sll1745: 50S ribosomal protein L10
*
Cyanothece sp. ATCC 51142

Site:
position = -196
score = 69.21
sequence = AAATAAACTTTGGTT...

Gene: cce_0224: 50S ribosomal protein L10
*
Cyanothece sp. PCC 8801

Site:
position = -216
score = 49.12
sequence = AATGCTTGTTTGGCT...

Gene: PCC8801_1738: 50S ribosomal protein L10
*
Cyanothece sp. PCC 7425

Site:
position = -200
score = 61.57
sequence = ACACAACTGAATCAA...

Gene: Cyan7425_4011: 50S ribosomal protein L10
*
Microcystis aeruginosa NIES-843

Site:
position = -215
score = 43.36
sequence = TGAGGGACTGGCTTA...

Gene: MAE_43870: 50S ribosomal protein L10
*
Nostoc sp. PCC 7120

Site:
position = -225
score = 73.45
sequence = AAACTAAATATGCAA...

Gene: alr5302: 50S ribosomal protein L10
 
Trichodesmium erythraeum IMS101

Gene: Tery_0263: 50S ribosomal protein L10
*
Synechococcus elongatus PCC 7942

Site:
position = -183
score = 69.55
sequence = TTGTAACTAAATAGC...

Gene: Synpcc7942_0632: 50S ribosomal protein L10
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT2090: 50S ribosomal protein L10
*
Synechococcus sp. JA-3-3Ab

Site:
position = -228
score = 60.5
sequence = CACAGTCGAATAGCG...

Gene: CYA_1782: 50S ribosomal protein L10
 
Synechococcus sp. WH 8102

Gene: SYNW2341: 50S ribosomal protein L10
*
Gloeobacter violaceus PCC 7421

Site:
position = -160
score = 65.87
sequence = TTCAACCGAATCCGC...

Gene: gvip225: 50S ribosomal protein L10
*
Thermosynechococcus elongatus BP-1

Site:
position = -150
score = 59.98
sequence = ACAACTCAAGACTAA...

Gene: tlr0297: 50S ribosomal protein L10
50S ribosomal protein L10
rplL
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A1026: ribosomal protein L7/L12
 
Synechocystis sp. PCC 6803

Gene: sll1746: ribosomal protein L7/L12
 
Cyanothece sp. ATCC 51142

Gene: cce_0223: ribosomal protein L7/L12
 
Cyanothece sp. PCC 8801

Gene: PCC8801_1737: ribosomal protein L7/L12
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_4010: ribosomal protein L7/L12
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120

Gene: alr5303: ribosomal protein L7/L12
 
Trichodesmium erythraeum IMS101

Gene: Tery_0262: ribosomal protein L7/L12
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_0631: ribosomal protein L7/L12
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT2091: ribosomal protein L7/L12
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_1784: ribosomal protein L7/L12
 
Synechococcus sp. WH 8102

Gene: SYNW2340: ribosomal protein L7/L12
 
Gloeobacter violaceus PCC 7421

Gene: gvip226: ribosomal protein L7/L12
 
Thermosynechococcus elongatus BP-1

Gene: null: ribosomal protein L7/L12
ribosomal protein L7/L12
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD