Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L10_leader - Thermotogales

Properties
Regulator type: RNA regulatory element
Name: L10_leader
RFAM: RF00557
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Thermotogae
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Thermotoga maritima MSB8 2 1
Thermotoga sp. RQ2 2 1
Thermotoga neapolitana DSM 4359 2 1
Thermotoga petrophila RKU-1 2 1
Thermotoga naphthophila RKU-10 2 1
Thermotoga lettingae TMO 2 1
Thermosipho africanus TCF52B 2 1
Thermosipho melanesiensis BI429 2 1
Fervidobacterium nodosum Rt17-B1 2 1
Petrotoga mobilis SJ95 2 1
Thermotogales bacterium TBF 19.5.1 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplJ
*
Thermotoga maritima MSB8

Site:
position = -133
score = 36.7
sequence = GAAAACTCAATAAGA...

Gene: TM0456: LSU ribosomal protein L10p (P0)
*
Thermotoga sp. RQ2

Site:
position = -136
score = 40.19
sequence = TCGAAAACTCAATAA...

Gene: TRQ2_0479: LSU ribosomal protein L10p (P0)
*
Thermotoga neapolitana DSM 4359

Site:
position = -137
score = 32.35
sequence = AACAAATAGCCGAGC...

Gene: CTN_0217: LSU ribosomal protein L10p (P0)
*
Thermotoga petrophila RKU-1

Site:
position = -136
score = 40.19
sequence = TCGAAAACTCAATAA...

Gene: Tpet_0464: LSU ribosomal protein L10p (P0)
*
Thermotoga naphthophila RKU-10

Site:
position = -134
score = 40.19
sequence = GAAAACTCAATAAGA...

Gene: Tnap_0238: LSU ribosomal protein L10p (P0)
*
Thermotoga lettingae TMO

Site:
position = -115
score = 46.64
sequence = TGAATAATTGCTTTT...

Gene: Tlet_0475: LSU ribosomal protein L10p (P0)
*
Thermosipho africanus TCF52B

Site:
position = -142
score = 34.2
sequence = TGGTAAAATTTAGTC...

Gene: THA_1347: LSU ribosomal protein L10p (P0)
*
Thermosipho melanesiensis BI429

Site:
position = -141
score = 33.93
sequence = TGTTAAAATCTAACC...

Gene: Tmel_0504: LSU ribosomal protein L10p (P0)
*
Fervidobacterium nodosum Rt17-B1

Site:
position = -163
score = 25.14
sequence = TGGTATATCTCAATG...

Gene: Fnod_1784: LSU ribosomal protein L10p (P0)
*
Petrotoga mobilis SJ95

Site:
position = -151
score = 42.46
sequence = AGTAATAACAGATTG...

Gene: Pmob_0357: LSU ribosomal protein L10p (P0)
*
Thermotogales bacterium TBF 19.5.1

Site:
position = -150
score = 41.16
sequence = AAGTGAAAGTGAATA...

Gene: Kole_1840: LSU ribosomal protein L10p (P0)
LSU ribosomal protein L10p (P0)
rplL
 
Thermotoga maritima MSB8

Gene: TM0457: LSU ribosomal protein L7/L12 (P1/P2)
 
Thermotoga sp. RQ2

Gene: TRQ2_0478: LSU ribosomal protein L7/L12 (P1/P2)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0216: LSU ribosomal protein L7/L12 (P1/P2)
 
Thermotoga petrophila RKU-1

Gene: Tpet_0463: LSU ribosomal protein L7/L12 (P1/P2)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0239: LSU ribosomal protein L7/L12 (P1/P2)
 
Thermotoga lettingae TMO

Gene: Tlet_0476: LSU ribosomal protein L7/L12 (P1/P2)
 
Thermosipho africanus TCF52B

Gene: THA_1346: LSU ribosomal protein L7/L12 (P1/P2)
 
Thermosipho melanesiensis BI429

Gene: Tmel_0503: LSU ribosomal protein L7/L12 (P1/P2)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_1783: LSU ribosomal protein L7/L12 (P1/P2)
 
Petrotoga mobilis SJ95

Gene: Pmob_0356: LSU ribosomal protein L7/L12 (P1/P2)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_1839: LSU ribosomal protein L7/L12 (P1/P2)
LSU ribosomal protein L7/L12 (P1/P2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD