Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog ydaO-yuaA - Cyanobacteria

Properties
Regulator type: RNA regulatory element
Name: ydaO-yuaA
RFAM: RF00379
Regulation mode:
Biological process: Cell wall metabolism; Osmotic stress response
Effector:
Phylum: Cyanobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Synechococcus sp. PCC 7002 3 1
Synechocystis sp. PCC 6803
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 8801 3 1
Cyanothece sp. PCC 7425 2 2
Microcystis aeruginosa NIES-843 1 1
Nostoc sp. PCC 7120 4 3
Trichodesmium erythraeum IMS101
Synechococcus elongatus PCC 7942
Prochlorococcus marinus str. MIT 9313
Synechococcus sp. JA-3-3Ab
Synechococcus sp. WH 8102
Gloeobacter violaceus PCC 7421
Thermosynechococcus elongatus BP-1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
tauC
*
Synechococcus sp. PCC 7002

Site:
position = -262
score = 56.25
sequence = CTGAGTAAGTCAGCT...

Gene: SYNPCC7002_G0016: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
 
Synechocystis sp. PCC 6803
 
Cyanothece sp. ATCC 51142
*
Cyanothece sp. PCC 8801

Site:
position = -268
score = 70.44
sequence = GAGTAAGTCAGCTTA...

Gene: PCC8801_3675: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
 
Cyanothece sp. PCC 7425
 
Microcystis aeruginosa NIES-843
*
Nostoc sp. PCC 7120

Site:
position = -322
score = 63.75
sequence = TCGAGTAAGTCAGCC...

Gene: all3036: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
tauA
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_G0015: ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein
 
Synechocystis sp. PCC 6803
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 8801

Gene: PCC8801_3676: ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein
 
Cyanothece sp. PCC 7425
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
 
Gloeobacter violaceus PCC 7421

Gene: gll3956: ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein
 
Thermosynechococcus elongatus BP-1
ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein
tauB
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_G0014: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein
 
Synechocystis sp. PCC 6803
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 8801

Gene: PCC8801_3677: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein
 
Cyanothece sp. PCC 7425
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120

Gene: all3035: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
 
Gloeobacter violaceus PCC 7421

Gene: gvip217: ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein
 
Thermosynechococcus elongatus BP-1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein
 
CRON 2.
PF00582
 
Synechococcus sp. PCC 7002
 
Synechocystis sp. PCC 6803
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 8801
*2
Cyanothece sp. PCC 7425

Site:
position = -264
score = 54.48
sequence = TCGAACAAGTCAGCC...

Gene: Cyan7425_4306: Hypothetical protein

Gene: Cyan7425_1659: Hypothetical protein
 
Microcystis aeruginosa NIES-843
*
Nostoc sp. PCC 7120

Site:
position = -273
score = 47.76
sequence = CTTTAGTGGGTAGCC...

Gene: all3034: Hypothetical protein
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
Hypothetical protein
COG1055
 
Synechococcus sp. PCC 7002
 
Synechocystis sp. PCC 6803

Gene: slr0753: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055
 
Cyanothece sp. ATCC 51142

Gene: cce_0065: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055
 
Cyanothece sp. PCC 8801

Gene: PCC8801_2811: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055
*
Cyanothece sp. PCC 7425

Site:
position = -280
score = 65.79
sequence = TAATCCGTCAGCCTA...

Gene: Cyan7425_5261: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055
*
Microcystis aeruginosa NIES-843

Site:
position = -397
score = 66.57
sequence = CAGAGTAAGTCAGCC...

Gene: MAE_59110: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055
 
Nostoc sp. PCC 7120

Gene: all3033: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_0041: Na+/H+ antiporter NhaD and related arsenite permeases, COG1055
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
Na+/H+ antiporter NhaD and related arsenite permeases, COG1055
 
CRON 3.
COG0438
 
Synechococcus sp. PCC 7002
 
Synechocystis sp. PCC 6803
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 8801
 
Cyanothece sp. PCC 7425
 
Microcystis aeruginosa NIES-843
*
Nostoc sp. PCC 7120

Site:
position = -289
score = 73.01
sequence = AAATCAGTCAGCCTA...

Gene: alr3370: Glycosyltransferase (EC 2.4.1.-)
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
Glycosyltransferase (EC 2.4.1.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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