Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog ykoK - Bacillales

Properties
Regulator type: RNA regulatory element
Name: ykoK
RFAM: RF00380
Regulation mode:
Biological process: Magnesium homeostasis
Effector: Magnesium ion, (Mg2+)
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 1 1
Bacillus amyloliquefaciens FZB42 1 1
Bacillus pumilus SAFR-032 1 1
Bacillus licheniformis DSM 13 1 1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125 5 2
Bacillus clausii KSM-K16 1 1
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
BH3247
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -365
score = 132.87
sequence = ATCATCCTCGTTAGG...

Gene: BH1946: transposase (01)
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
transposase (02)
mgtE
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -396
score = 147.76
sequence = AGGAACTTCGTTAGG...

Gene: BSU13300: Magnesium transporter
*
Bacillus amyloliquefaciens FZB42

Site:
position = -399
score = 146.39
sequence = AAGAACTTCGTTAGG...

Gene: RBAM_013120: Magnesium transporter
*
Bacillus pumilus SAFR-032

Site:
position = -370
score = 149.21
sequence = TGAGACTTCGTTAGG...

Gene: BPUM_1225: Magnesium transporter
*
Bacillus licheniformis DSM 13

Site:
position = -411
score = 151.05
sequence = CAGCTCTTCGTTAGG...

Gene: BLi01426: Magnesium transporter
 
Anoxybacillus flavithermus WK1

Gene: Aflv_2108: Magnesium transporter
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 4
Bacillus halodurans C-125

Gene: BH3224: Magnesium transporter

Gene: BH0511: Magnesium transporter

Gene: BH1947: Magnesium transporter

Gene: BH1948: Magnesium transporter
*
Bacillus clausii KSM-K16

Site:
position = -378
score = 131.91
sequence = ATATATTCCTCGTTA...

Gene: ABC0737: Magnesium transporter
 
Oceanobacillus iheyensis HTE831

Gene: OB1224: Magnesium transporter
 
Paenibacillus sp. JDR-2
Magnesium transporter
sapB
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC1976: Peptide transport system permease protein sapB (TC 3.A.1.5.5)
*2
Bacillus halodurans C-125

Site:
position = -318
score = 149.52
sequence = ACAACCACTTCGTTA...

Gene: BH3225: Peptide transport system permease protein sapB (TC 3.A.1.5.5)

Gene: BH0541: Peptide transport system permease protein sapB (TC 3.A.1.5.5)
 
Bacillus clausii KSM-K16

Gene: ABC0863: Peptide transport system permease protein sapB (TC 3.A.1.5.5)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1734: Peptide transport system permease protein sapB (TC 3.A.1.5.5)
Peptide transport system permease protein sapB (TC 3.A.1.5.5)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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