Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GEMM_RNA_motif - Cyanobacteria

Properties
Regulator type: RNA regulatory element
Name: GEMM_RNA_motif
RFAM: RF01051
Regulation mode:
Biological process: Second messenger response
Effector: Cyclic diguanylate
Phylum: Cyanobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Synechococcus sp. PCC 7002
Synechocystis sp. PCC 6803
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 7425 5 5
Microcystis aeruginosa NIES-843
Nostoc sp. PCC 7120
Trichodesmium erythraeum IMS101
Synechococcus elongatus PCC 7942
Prochlorococcus marinus str. MIT 9313
Synechococcus sp. JA-3-3Ab
Synechococcus sp. WH 8102
Gloeobacter violaceus PCC 7421
Thermosynechococcus elongatus BP-1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Cyan7425_2124
 
Synechococcus sp. PCC 7002
 
Synechocystis sp. PCC 6803
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 8801
*
Cyanothece sp. PCC 7425

Site:
position = -199
score = 35.98
sequence = TCCCGAAAAGGCAAC...

Gene: Cyan7425_2124: Hypothetical protein
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
Hypothetical protein
 
CRON 2.
Cyan7425_0032
 
Synechococcus sp. PCC 7002
 
Synechocystis sp. PCC 6803
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 8801
*
Cyanothece sp. PCC 7425

Site:
position = -431
score = 35.81
sequence = TCCCGAAAAGGCAAC...

Gene: Cyan7425_0032: Hypothetical protein
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
Hypothetical protein
 
CRON 3.
tlr0560
 
Synechococcus sp. PCC 7002
 
Synechocystis sp. PCC 6803
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 8801
 
Cyanothece sp. PCC 7425
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
 
Gloeobacter violaceus PCC 7421
*
Thermosynechococcus elongatus BP-1

Site:
position = -287
score = 33.71
sequence = CCCGATAAAGGTAAG...

Gene: tlr0560: Hypothetical protein
Hypothetical protein
 
CRON 4.
Cyan7425_1496
 
Synechococcus sp. PCC 7002
 
Synechocystis sp. PCC 6803
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 8801
*7
Cyanothece sp. PCC 7425

Gene: Cyan7425_4838: Transcriptional regulator, XRE family

Gene: Cyan7425_1496: Transcriptional regulator, XRE family

Site:
position = -340
score = 36.08
sequence = AGTCCCGAAAAGGCA...

Gene: Cyan7425_0305: Transcriptional regulator, XRE family

Gene: Cyan7425_2649: Transcriptional regulator, XRE family

Site:
position = -301
score = 32.81
sequence = AGTCCCGAAAAAGCA...

Gene: Cyan7425_5459: Transcriptional regulator, XRE family

Site:
position = -340
score = 33.32
sequence = AGTCCCGAAAAGGCA...

Gene: Cyan7425_5453: Transcriptional regulator, XRE family

Gene: Cyan7425_3037: Transcriptional regulator, XRE family
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
Transcriptional regulator, XRE family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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