Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Regulog GEMM_RNA_motif - Desulfovibrionales

Properties
Regulator type: RNA regulatory element
Name: GEMM_RNA_motif
RFAM: RF01051
Regulation mode:
Biological process: Second messenger response
Effector: Cyclic diguanylate
Phylum: Proteobacteria/delta
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough
Desulfovibrio vulgaris str. Miyazaki F
Desulfovibrio desulfuricans G20 1 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638
Desulfovibrio magneticus RS-1 3 2
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028
Desulfohalobium retbaense DSM 5692 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Dret_0945
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
*
Desulfohalobium retbaense DSM 5692

Site:
position = -292
score = 62.4
sequence = ACTGACAAAGCCAAA...

Gene: Dret_0945: Hypothetical protein
Hypothetical protein
 
CRON 2.
mcp2
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
*2
Desulfohalobium retbaense DSM 5692

Gene: Dret_2373: Methyl-accepting chemotaxis sensory transducer

Site:
position = -400
score = 57.85
sequence = GGACTGACAAAGCCA...

Gene: Dret_0342: Methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer
 
CRON 3.
COG2204
 2
Desulfovibrio vulgaris Hildenborough

Gene: DVUA0025: Two component, sigma54 specific, transcriptional regulator, Fis family

Gene: DVUA0024: Two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0699: Two component, sigma54 specific, transcriptional regulator, Fis family
*
Desulfovibrio desulfuricans G20

Site:
position = -102
score = 42.71
sequence = GAGAATCAAGCCAAC...

Gene: Dde_0820: Two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Two component, sigma54 specific, transcriptional regulator, Fis family
 
CRON 4.
DMR_29160
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio magneticus RS-1

Site:
position = -241
score = 32.32
sequence = AAGTCTGTAAAGCCA...

Gene: DMR_29160: Cytochrome c family protein
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Cytochrome c family protein
mcp
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_1781: Methyl-accepting chemotaxis sensory transducer
 
Desulfovibrio magneticus RS-1

Gene: DMR_29150: Methyl-accepting chemotaxis sensory transducer
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Methyl-accepting chemotaxis sensory transducer
 
CRON 5.
mcp
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio magneticus RS-1

Site:
position = 15
score = 31.68
sequence = TGCCCAATAACGCCA...

Gene: DMR_38310: Methyl-accepting chemotaxis protein
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Methyl-accepting chemotaxis protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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