Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GEMM_RNA_motif - Bacillales

Properties
Regulator type: RNA regulatory element
Name: GEMM_RNA_motif
RFAM: RF01051
Regulation mode:
Biological process: Second messenger response
Effector: Cyclic diguanylate
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032 6 1
Bacillus licheniformis DSM 13 4 1
Anoxybacillus flavithermus WK1 3 2
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579 2 2
Bacillus halodurans C-125 3 1
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831 1 1
Paenibacillus sp. JDR-2 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
sinR
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU24610: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_022930: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2193: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)
 
Bacillus licheniformis DSM 13

Gene: BLi02636: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC1282: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)
 
Bacillus halodurans C-125

Gene: BH2125: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)
 
Bacillus clausii KSM-K16
*
Oceanobacillus iheyensis HTE831

Site:
position = -315
score = 72.74
sequence = CCTCAGAAAAAGGCA...

Gene: OB2524: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)
 
Paenibacillus sp. JDR-2
SinR, regulator of post-exponential-phase responses genes (competence and sporulation)
 
CRON 2.
tlpA
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
*
Anoxybacillus flavithermus WK1

Site:
position = -190
score = 68.02
sequence = TGAATAATCGGCAAA...

Gene: Aflv_0339: Methyl-accepting chemotaxis sensory transducer
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -218
score = 60.98
sequence = AGCGAGAAAGGCAAA...

Gene: BC0422: Methyl-accepting chemotaxis sensory transducer
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -181
score = 74.42
sequence = AAACTGAAAAAGGCA...

Gene: Pjdr2_3934: Methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer
 
CRON 3.
Aflv_1600
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
*
Anoxybacillus flavithermus WK1

Site:
position = -65
score = 63.12
sequence = TAAGAAGTAAAGGCA...

Gene: Aflv_1600: Hypothetical protein
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Hypothetical protein
sspH
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1599: Small, acid-soluble spore protein H
 
Geobacillus kaustophilus HTA426

Gene: GK2129: Small, acid-soluble spore protein H
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Small, acid-soluble spore protein H
 
CRON 4.
BC1060
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -151
score = 52.05
sequence = GATATTTTTAGCACA...

Gene: BC1060: Collagen adhesin
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Collagen adhesin
 
CRON 5.
BH0563
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -202
score = 46.03
sequence = CTTGAAAAAGGCGAG...

Gene: BH0563: Hypothetical protein
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Hypothetical protein
BH0564
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0564: Hypothetical protein
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Hypothetical protein
mcp
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1

Gene: Aflv_2244: Methyl-accepting chemotaxis protein
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0565: Methyl-accepting chemotaxis protein
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Methyl-accepting chemotaxis protein
 
CRON 6.
srfAA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU03480: Surfactin synthetase subunit 1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_003650: Surfactin synthetase subunit 1
*
Bacillus pumilus SAFR-032

Site:
position = -232
score = 66.4
sequence = GAAGAAAAAGGCAAA...

Gene: BPUM_0319: Surfactin synthetase subunit 1
*
Bacillus licheniformis DSM 13

Site:
position = -269
score = 69.61
sequence = GCAGATAAAGGCAAA...

Gene: BLi00401: Surfactin synthetase subunit 1
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Surfactin synthetase subunit 1
srfAB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU03490: Surfactin synthetase subunit 2
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_003660: Surfactin synthetase subunit 2
 
Bacillus pumilus SAFR-032

Gene: BPUM_0320: Surfactin synthetase subunit 2
 
Bacillus licheniformis DSM 13

Gene: BLi00402: Surfactin synthetase subunit 2
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Surfactin synthetase subunit 2
srfAC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU03510: Surfactin synthetase subunit 1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_003680: Surfactin synthetase subunit 1
 
Bacillus pumilus SAFR-032

Gene: BPUM_0321: Surfactin synthetase subunit 1
 
Bacillus licheniformis DSM 13

Gene: BLi00403: Surfactin synthetase subunit 1
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Surfactin synthetase subunit 1
BPUM_0322
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_0322: Peptide antibiotics synthetase
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Peptide antibiotics synthetase
BPUM_0323
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_0323: Peptide antibiotics synthetase
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Peptide antibiotics synthetase
srfAD
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU03520: Surfactin synthetase thioesterase subunit (EC 3.1.2.-)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_003690: Surfactin synthetase thioesterase subunit (EC 3.1.2.-)
 
Bacillus pumilus SAFR-032

Gene: BPUM_0324: Surfactin synthetase thioesterase subunit (EC 3.1.2.-)
 
Bacillus licheniformis DSM 13

Gene: BLi00404: Surfactin synthetase thioesterase subunit (EC 3.1.2.-)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Surfactin synthetase thioesterase subunit (EC 3.1.2.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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