Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog AgaR - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: N-acetylgalactosamine utilization
Effector: N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Xylella fastidiosa 9a5c
Xanthomonas axonopodis pv. citri str. 306
Xanthomonas campestris pv. campestris str. ATCC 33913
Stenotrophomonas maltophilia K279a 9 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
agaS
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
*
Stenotrophomonas maltophilia K279a

Site:
position = -64
score = 8.23278
sequence = CTTTCG-(13)-CGAAAG

Gene: Smlt4434: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
agaK
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4435: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
agaZ
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4436: Tagatose-6-phosphate kinase (EC 2.7.1.144)
Tagatose-6-phosphate kinase (EC 2.7.1.144)
agaR
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4437: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
agaA
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4438: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
agaP-III
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4439: Predicted N-acetylgalactosamine permease, sugar transporter family
Predicted N-acetylgalactosamine permease, sugar transporter family
 
CRON 2.
agaH-III
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
*
Stenotrophomonas maltophilia K279a

Site:
position = -313
score = 8.23278
sequence = CTTTCG-(13)-CGAAAG

Gene: Smlt4433: Predicted secreted glycosyl hydrolase, GH31 family
Predicted secreted glycosyl hydrolase, GH31 family
omp_aga
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4432: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
agaO
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a

Gene: Smlt4431: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family
Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD