Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog AgaR - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: N-acetylgalactosamine utilization
Effector: N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio vulnificus CMCP6 9 1
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633
Vibrio shilonii AK1
Vibrio splendidus LGP32
Vibrio fischeri ES114 9 2
Vibrio salmonicida LFI1238
Vibrio angustum S14 9 1
Photobacterium profundum SS9 11 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
agaR
 
Vibrio cholerae O1 biovar eltor str. N16961
*
Vibrio vulnificus CMCP6

Site:
position = -144
score = 7.41002
sequence = GAAAGG-(16)-CGAAAG

Site:
position = -47
score = 7.01802
sequence = GAAAGC-(14)-TGAAAG

Gene: VV21025: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
*
Vibrio angustum S14

Site:
position = -146
score = 7.61052
sequence = GAAAGA-(16)-CGAAAG

Site:
position = -49
score = 7.25974
sequence = GAAACA-(15)-TGAAAT

Gene: VAS14_15564: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
*
Photobacterium profundum SS9

Site:
position = -49
score = 7.37562
sequence = GAAACA-(14)-CGAAAT

Site:
position = -146
score = 7.41002
sequence = GAAAGG-(16)-CGAAAG

Gene: PBPRB1036: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
agaZ
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21024: Tagatose-6-phosphate kinase (EC 2.7.1.144)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_A1005: Tagatose-6-phosphate kinase (EC 2.7.1.144)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_15569: Tagatose-6-phosphate kinase (EC 2.7.1.144)
 2
Photobacterium profundum SS9

Gene: PBPRB0141: Tagatose-6-phosphate kinase (EC 2.7.1.144)

Gene: PBPRB1037: Tagatose-6-phosphate kinase (EC 2.7.1.144)
Tagatose-6-phosphate kinase (EC 2.7.1.144)
agaS
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21023: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_A1004: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_15574: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
 
Photobacterium profundum SS9

Gene: PBPRB0142: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
agaV
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21022: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_15579: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
 
Photobacterium profundum SS9

Gene: PBPRB1038: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
agaW
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21021: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_15584: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
 
Photobacterium profundum SS9

Gene: PBPRB1039: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
agaE
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21020: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_15589: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
 
Photobacterium profundum SS9

Gene: PBPRB1040: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
agaF
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21019: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_15594: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)
 
Photobacterium profundum SS9

Gene: PBPRB1041: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)
PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)
agaA
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21018: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_A0999: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_15599: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
 2
Photobacterium profundum SS9

Gene: PBPRB1042: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)

Gene: PBPRB0147: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
agaY
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21017: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
*
Vibrio fischeri ES114

Site:
position = -180
score = 6.4946
sequence = AAAACA-(15)-CGAAAG

Gene: VF_A0989: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_15604: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-)
*2
Photobacterium profundum SS9

Gene: PBPRB1043: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-)

Site:
position = -201
score = 6.59032
sequence = GAAAGG-(14)-AGAAAG

Gene: PBPRB0157: Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-)
Tagatose-1,6-bisphosphate aldolase AgaY (EC 4.1.2.-)
agaR2
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
*
Vibrio fischeri ES114

Site:
position = -60
score = 6.41312
sequence = GTAAGG-(16)-CGAAAG

Gene: VF_A1006: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -39
score = 6.63995
sequence = GAAAGA-(14)-CGTAAG

Site:
position = -250
score = 7.29414
sequence = GAAAGG-(16)-TGAAAG

Gene: PBPRB0140: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
agaV-II
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_A1003: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB0143: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
agaW-II
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_A1002: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB0144: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
agaE-II
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_A1001: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB0145: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
agaF-II
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_A1000: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB0146: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)
PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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