Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog SAM - Desulfovibrionales

Properties
Regulator type: RNA regulatory element
Name: SAM
RFAM: RF00162
Regulation mode:
Biological process: Methionine biosynthesis
Effector: S-adenosylmethionine
Phylum: Proteobacteria/delta
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough 1 1
Desulfovibrio vulgaris str. Miyazaki F 1 1
Desulfovibrio desulfuricans G20 1 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638 1 1
Desulfovibrio magneticus RS-1
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028
Desulfohalobium retbaense DSM 5692
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
DVU1170
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -372
score = 45.81
sequence = TCACTCATGACGAGG...

Gene: DVU1170: Hypothetical protein
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -410
score = 45.04
sequence = CCATTCATGGAGAGA...

Gene: DvMF_3066: Hypothetical protein
*
Desulfovibrio desulfuricans G20

Site:
position = -291
score = 51.36
sequence = ACTCATGAAGAGGAC...

Gene: Dde_2470: Hypothetical protein
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -317
score = 53.59
sequence = TTACTCATGTAGAGG...

Gene: Desal_0862: Hypothetical protein
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD