Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Glycine - Corynebacteriaceae

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Actinobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium glutamicum ATCC 13032
Corynebacterium efficiens YS-314
Corynebacterium diphtheriae NCTC 13129
Corynebacterium aurimucosum ATCC 700975
Corynebacterium jeikeium K411 3 1
Corynebacterium urealyticum DSM 7109
Corynebacterium amycolatum SK46
Corynebacterium kroppenstedtii DSM 44385 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gcvP
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium efficiens YS-314
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_1713: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
*
Corynebacterium jeikeium K411

Site:
position = -255
score = 35.33
sequence = TAGCTGTGGTGGGAG...

Site:
position = -158
score = 50.47
sequence = GAGGCAACTCTGGAA...

Gene: jk0209: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1794: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Corynebacterium amycolatum SK46
*
Corynebacterium kroppenstedtii DSM 44385

Site:
position = -317
score = 37.87
sequence = GAGTTGCAACGGGAG...

Site:
position = -200
score = 40.82
sequence = GAGGCACCACTGGAA...

Gene: ckrop_0298: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
gcvT
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium efficiens YS-314
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_1714: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Corynebacterium jeikeium K411

Gene: jk0210: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1793: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Corynebacterium amycolatum SK46
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_0299: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
 
Corynebacterium glutamicum ATCC 13032
 
Corynebacterium efficiens YS-314
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411

Gene: jk0211: Glycine cleavage system H protein
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1792: Glycine cleavage system H protein
 
Corynebacterium amycolatum SK46
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_0300: Glycine cleavage system H protein
Glycine cleavage system H protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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