Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Glycine - Ralstonia

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ralstonia solanacearum GMI1000 4 1
Ralstonia pickettii 12J 5 2
Ralstonia metallidurans CH34 5 2
Ralstonia eutropha JMP134 6 2
Ralstonia eutropha H16 5 2
Cupriavidus taiwanensis 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gcvT
*
Ralstonia solanacearum GMI1000

Site:
position = -363
score = 40.7
sequence = CCATCCATCCGGGAG...

Site:
position = -252
score = 32.75
sequence = GGCCGCACTCTGGAG...

Gene: RSc3293: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Ralstonia pickettii 12J

Site:
position = -366
score = 37.24
sequence = CCATCCATCCGGGAG...

Site:
position = -256
score = 24.18
sequence = GACCGCACTCTGGAG...

Gene: Rpic_3487: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Ralstonia metallidurans CH34

Site:
position = -335
score = 48.66
sequence = GCATCCGGCCGGGAG...

Site:
position = -226
score = 44.21
sequence = TGCCGCACTCTGGAG...

Gene: Rmet_3480: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*2
Ralstonia eutropha JMP134

Site:
position = -329
score = 47.01
sequence = GCATCCGACCGGGAG...

Site:
position = -219
score = 39.23
sequence = TGCCGCACTCTGGAG...

Gene: Reut_A3329: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)

Gene: Reut_B4806: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Ralstonia eutropha H16

Site:
position = -332
score = 46.05
sequence = GCATCCGACCGGGAG...

Site:
position = -223
score = 37.46
sequence = TGCCGAACTCTGGAG...

Gene: H16_A3619: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Cupriavidus taiwanensis

Site:
position = -328
score = 49.6
sequence = GCATCCGACCGGGAG...

Site:
position = -219
score = 38.32
sequence = TGCCGCACTCTGGAG...

Gene: RALTA_A3074: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
 
Ralstonia solanacearum GMI1000

Gene: RSc3294: Glycine cleavage system H protein
 
Ralstonia pickettii 12J

Gene: Rpic_3488: Glycine cleavage system H protein
 
Ralstonia metallidurans CH34

Gene: Rmet_3481: Glycine cleavage system H protein
 
Ralstonia eutropha JMP134

Gene: Reut_A3330: Glycine cleavage system H protein
 
Ralstonia eutropha H16

Gene: H16_A3620: Glycine cleavage system H protein
 
Cupriavidus taiwanensis

Gene: RALTA_A3075: Glycine cleavage system H protein
Glycine cleavage system H protein
gcvP
 
Ralstonia solanacearum GMI1000

Gene: RSc3295: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Ralstonia pickettii 12J

Gene: Rpic_3489: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Ralstonia metallidurans CH34

Gene: Rmet_3482: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Ralstonia eutropha JMP134

Gene: Reut_A3331: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Ralstonia eutropha H16

Gene: H16_A3621: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Cupriavidus taiwanensis

Gene: RALTA_A3076: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
yrbG
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_A3332: Hypothetical protein
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Hypothetical protein
sdaA
 
Ralstonia solanacearum GMI1000

Gene: RSc3296: L-serine dehydratase (EC 4.3.1.17)
 
Ralstonia pickettii 12J

Gene: Rpic_3490: L-serine dehydratase (EC 4.3.1.17)
 
Ralstonia metallidurans CH34

Gene: Rmet_3483: L-serine dehydratase (EC 4.3.1.17)
 
Ralstonia eutropha JMP134

Gene: Reut_A3333: L-serine dehydratase (EC 4.3.1.17)
 
Ralstonia eutropha H16

Gene: H16_A3622: L-serine dehydratase (EC 4.3.1.17)
 
Cupriavidus taiwanensis

Gene: RALTA_A3077: L-serine dehydratase (EC 4.3.1.17)
L-serine dehydratase (EC 4.3.1.17)
 
CRON 2.
dadA
 
Ralstonia solanacearum GMI1000
*
Ralstonia pickettii 12J

Site:
position = -149
score = 43.85
sequence = CGACTGCGAATCTGG...

Site:
position = -252
score = 51.79
sequence = GCAACACGCCGCAGG...

Gene: Rpic_4307: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
*
Ralstonia metallidurans CH34

Site:
position = -272
score = 48.58
sequence = CGCGTGTATCGGGAG...

Site:
position = -175
score = 42.13
sequence = CATTGAACTCTGAAG...

Gene: Rmet_5580: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
*
Ralstonia eutropha JMP134

Site:
position = -241
score = 40.35
sequence = GCGACCTCGCAGGAG...

Site:
position = -142
score = 46.77
sequence = AGTACAGATCTGGAG...

Gene: Reut_B3726: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
*
Ralstonia eutropha H16

Site:
position = -176
score = 35.82
sequence = GTCAGTGCACTCTGA...

Site:
position = -275
score = 53.59
sequence = CAATGTGATGCAGGG...

Gene: H16_B0508: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
*
Cupriavidus taiwanensis

Site:
position = -178
score = 32.15
sequence = GTCAGTGCACTCTGA...

Site:
position = -277
score = 44.86
sequence = CAGCGTGATGCAGGG...

Gene: RALTA_B0324: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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