Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Glycine - Bacillales

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 1
Bacillus amyloliquefaciens FZB42 4 2
Bacillus pumilus SAFR-032 4 2
Bacillus licheniformis DSM 13 3 1
Anoxybacillus flavithermus WK1 3 1
Geobacillus kaustophilus HTA426 3 1
Bacillus cereus ATCC 14579 1 1
Bacillus halodurans C-125 3 1
Bacillus clausii KSM-K16 3 1
Oceanobacillus iheyensis HTE831 3 1
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gcvT
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -177
score = 33.77
sequence = TCGACGCAACTCTGG...

Site:
position = -274
score = 60.29
sequence = AATGACAGCAAGGGG...

Gene: BSU24570: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -176
score = 24.75
sequence = ACTCTGGAGAGTGTC...

Site:
position = -280
score = 61.23
sequence = AATGACAGCAAGGGG...

Gene: RBAM_022890: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Bacillus pumilus SAFR-032

Site:
position = -201
score = 35.25
sequence = ACTCTGGAGAGTGTT...

Site:
position = -312
score = 62.4
sequence = GATGATGGTATGGGG...

Gene: BPUM_2189: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Bacillus licheniformis DSM 13

Site:
position = -250
score = 37.99
sequence = TTGACGCAACTCTGG...

Site:
position = -350
score = 49.62
sequence = AATGACGGCAAGGGG...

Gene: BLi02631: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Anoxybacillus flavithermus WK1

Site:
position = -229
score = 60.53
sequence = TGAGAACAAGGGGAG...

Site:
position = -145
score = 47.22
sequence = GACGCAGCTCTGGAG...

Gene: Aflv_0915: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Geobacillus kaustophilus HTA426

Site:
position = -192
score = 38.15
sequence = TTGACGCAGCTCTGG...

Site:
position = -276
score = 60.6
sequence = GATGACGGCAAGGGG...

Gene: GK2425: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Bacillus cereus ATCC 14579

Gene: BC4226: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Bacillus halodurans C-125

Site:
position = -327
score = 43.11
sequence = TCGACGCAGCTCTGG...

Site:
position = -417
score = 62.4
sequence = GATGAAAGCAAGGGG...

Gene: BH2816: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Bacillus clausii KSM-K16

Site:
position = -185
score = 35.07
sequence = TTGACGCATCTCTGG...

Site:
position = -274
score = 59.73
sequence = GATGATGGTAAAGGG...

Gene: ABC2495: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Oceanobacillus iheyensis HTE831

Site:
position = -135
score = 43.37
sequence = ATGACGCAACTCTGG...

Site:
position = -222
score = 53.47
sequence = GAAGATTACAAGGGG...

Gene: OB1904: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Paenibacillus sp. JDR-2
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvP1
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU24560: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_022880: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2188: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Bacillus licheniformis DSM 13

Gene: BLi02630: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0916: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Geobacillus kaustophilus HTA426

Gene: GK2424: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Bacillus cereus ATCC 14579

Gene: BC4225: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Bacillus halodurans C-125

Gene: BH2815: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Bacillus clausii KSM-K16

Gene: ABC2494: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Oceanobacillus iheyensis HTE831

Gene: OB1903: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Paenibacillus sp. JDR-2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
gcvP2
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU24550: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_022870: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2187: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Bacillus licheniformis DSM 13

Gene: BLi02629: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0917: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Geobacillus kaustophilus HTA426

Gene: GK2423: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Bacillus cereus ATCC 14579

Gene: BC4224: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Bacillus halodurans C-125

Gene: BH2814: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Bacillus clausii KSM-K16

Gene: ABC2493: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Oceanobacillus iheyensis HTE831

Gene: OB1902: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Paenibacillus sp. JDR-2
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
CRON 2.
glyP
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_0735: Sodium/glycine symporter GlyP
 
Bacillus licheniformis DSM 13

Gene: BLi00817: Sodium/glycine symporter GlyP
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -228
score = 60.07
sequence = GGGACGAATCTCTGG...

Site:
position = -330
score = 36.84
sequence = GATGAACCATTCAGG...

Gene: BC2317: Sodium/glycine symporter GlyP
 
Bacillus halodurans C-125

Gene: BH4033: Sodium/glycine symporter GlyP
 
Bacillus clausii KSM-K16

Gene: ABC2131: Sodium/glycine symporter GlyP
 
Oceanobacillus iheyensis HTE831

Gene: OB0872: Sodium/glycine symporter GlyP
 
Paenibacillus sp. JDR-2
Sodium/glycine symporter GlyP
 
CRON 3.
ydgF
 
Bacillus subtilis subsp. subtilis str. 168
*
Bacillus amyloliquefaciens FZB42

Site:
position = -227
score = 51.56
sequence = AGGAGCGGCTTCTGG...

Gene: RBAM_036990: D-serine/D-alanine/glycine transporter
*
Bacillus pumilus SAFR-032

Site:
position = -243
score = 51.87
sequence = AGGAGCAGCTTCTGG...

Gene: BPUM_3652: D-serine/D-alanine/glycine transporter
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
D-serine/D-alanine/glycine transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD