Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Glycine - Shewanellaceae

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 1 1
Shewanella putrefaciens CN-32 1 1
Shewanella sp W3-18-1 1 1
Shewanella sp ANA-3 1 1
Shewanella sp MR-4 1 1
Shewanella sp MR-7 1 1
Shewanella baltica OS155 1 1
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B 1 1
Shewanella loihica PV-4 1 1
Shewanella pealeana ATCC 700345 1 1
Shewanella halifaxensis HAW-EB4 1 1
Shewanella piezotolerans WP3 1 1
Shewanella sediminis HAW-EB3 1 1
Shewanella woodyi ATCC 51908 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glyP
*
Shewanella oneidensis MR-1

Site:
position = -392
score = 41.76
sequence = TGAAGGTAGCAGGAG...

Site:
position = -270
score = 54.21
sequence = CTCTGGAGAGACTAC...

Gene: SO_0858: Sodium/glycine symporter GlyP
*
Shewanella putrefaciens CN-32

Site:
position = -314
score = 53.35
sequence = GCCTCTGGAGAGACT...

Site:
position = -464
score = 40.15
sequence = GATGAAGGTAGCAGG...

Gene: Sputcn32_3143: Sodium/glycine symporter GlyP
*
Shewanella sp W3-18-1

Site:
position = -462
score = 40.15
sequence = TGAAGGTAGCAGGAG...

Site:
position = -312
score = 53.35
sequence = CTCTGGAGAGACTAC...

Gene: Sputw3181_0800: Sodium/glycine symporter GlyP
*
Shewanella sp ANA-3

Site:
position = -271
score = 52.92
sequence = GCCTCTGGAGAGACT...

Site:
position = -391
score = 42.27
sequence = GATGAAGGTAGCAGG...

Gene: Shewana3_3420: Sodium/glycine symporter GlyP
*
Shewanella sp MR-4

Site:
position = -390
score = 42.2
sequence = TGAAGGTAGCAGGAG...

Site:
position = -269
score = 53.2
sequence = CTCTGGAGAGACTAC...

Gene: Shewmr4_0714: Sodium/glycine symporter GlyP
*
Shewanella sp MR-7

Site:
position = -270
score = 53.63
sequence = GCCTCTGGAGAGACT...

Site:
position = -391
score = 42.2
sequence = GATGAAGGTAGCAGG...

Gene: Shewmr7_3308: Sodium/glycine symporter GlyP
*
Shewanella baltica OS155

Site:
position = -374
score = 50.05
sequence = GCCTCTGGAGAGACT...

Site:
position = -523
score = 36.45
sequence = GATGAAGGTAGCAGG...

Gene: Sbal_3506: Sodium/glycine symporter GlyP
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -240
score = 52.52
sequence = GCCTCTGGAGAGATC...

Site:
position = -357
score = 36.62
sequence = GATGAAGGTAGCAGG...

Gene: Sama_2953: Sodium/glycine symporter GlyP
*
Shewanella loihica PV-4

Site:
position = -355
score = 45.13
sequence = CCTCTGGAGAGACTG...

Site:
position = -480
score = 41.26
sequence = GATGAAGGTAGCAGG...

Gene: Shew_0496: Sodium/glycine symporter GlyP
*
Shewanella pealeana ATCC 700345

Site:
position = -462
score = 35.08
sequence = TGAAGGTAGCAGGAG...

Site:
position = -349
score = 58.27
sequence = GACGAGCCTCTGGAG...

Gene: Spea_0715: Sodium/glycine symporter GlyP
*
Shewanella halifaxensis HAW-EB4

Site:
position = -451
score = 35.71
sequence = TGAAGGTAGCAGGAG...

Site:
position = -337
score = 60.54
sequence = GACGAGCCTCTGGAG...

Gene: Shal_0768: Sodium/glycine symporter GlyP
*
Shewanella piezotolerans WP3

Site:
position = -337
score = 59.81
sequence = TGGACGAGCCTCTGG...

Gene: swp_4361: Sodium/glycine symporter GlyP
*
Shewanella sediminis HAW-EB3

Site:
position = -324
score = 52.17
sequence = TGGACGAGCCTCTGG...

Site:
position = -476
score = 23.06
sequence = GATGAAGGTAGCAGG...

Gene: Ssed_3886: Sodium/glycine symporter GlyP
*
Shewanella woodyi ATCC 51908

Site:
position = -320
score = 53.23
sequence = GCCTCTGGAGAGACT...

Site:
position = -444
score = 35.82
sequence = GATGAAGGTAGCAGG...

Gene: Swoo_3785: Sodium/glycine symporter GlyP
Sodium/glycine symporter GlyP
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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