Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Lysine - Bacillales

Properties
Regulator type: RNA regulatory element
Name: Lysine
RFAM: RF00168
Regulation mode:
Biological process: Lysine biosynthesis
Effector: Lysine
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 2 2
Bacillus amyloliquefaciens FZB42 2 2
Bacillus pumilus SAFR-032 2 2
Bacillus licheniformis DSM 13 2 2
Anoxybacillus flavithermus WK1 1 1
Geobacillus kaustophilus HTA426 1 1
Bacillus cereus ATCC 14579 4 4
Bacillus halodurans C-125 4 4
Bacillus clausii KSM-K16 2 2
Oceanobacillus iheyensis HTE831 2 2
Paenibacillus sp. JDR-2 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
yvsH
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -284
score = 114.36
sequence = TCAGTGAGGTAGAGG...

Gene: BSU33330: Putative lysine permease
*
Bacillus amyloliquefaciens FZB42

Site:
position = -292
score = 107.63
sequence = TCGGTGAGGTAGAGG...

Gene: RBAM_030450: Putative lysine permease
*
Bacillus pumilus SAFR-032

Site:
position = -369
score = 115.71
sequence = TCAGTGAGGTAGAGG...

Gene: BPUM_2995: Putative lysine permease
*
Bacillus licheniformis DSM 13

Site:
position = -292
score = 138.26
sequence = TTAGTGAGGTAGAGG...

Gene: BLi03522: Putative lysine permease
*
Anoxybacillus flavithermus WK1

Site:
position = -227
score = 128.65
sequence = GATGAGATAGAGGTC...

Gene: Aflv_1989: Putative lysine permease
*
Geobacillus kaustophilus HTA426

Site:
position = -272
score = 112.37
sequence = TTAATGGGATAGAGG...

Gene: GK0962: Putative lysine permease
*
Bacillus cereus ATCC 14579

Site:
position = -330
score = 128.31
sequence = TCGGTGAGGTAGAGG...

Gene: BC0865: Putative lysine permease
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Putative lysine permease
 
CRON 2.
lysC
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -306
score = 137.53
sequence = TGGTGAAGATAGAGG...

Gene: BSU28470: Aspartokinase (EC 2.7.2.4)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -306
score = 138.88
sequence = TGGTGAAGATAGAGG...

Gene: RBAM_025540: Aspartokinase (EC 2.7.2.4)
*
Bacillus pumilus SAFR-032

Site:
position = -319
score = 137.14
sequence = TGTTGAAGATAGAGG...

Gene: BPUM_2505: Aspartokinase (EC 2.7.2.4)
*
Bacillus licheniformis DSM 13

Site:
position = -330
score = 136.24
sequence = TGGTGAAGATAGAGG...

Gene: BLi02996: Aspartokinase (EC 2.7.2.4)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -390
score = 126.23
sequence = AACGTGAGATAGAGG...

Gene: BC1748: Aspartokinase (EC 2.7.2.4)
*
Bacillus halodurans C-125

Site:
position = -317
score = 116.42
sequence = AAGTGATGGTAGAGG...

Gene: BH3096: Aspartokinase (EC 2.7.2.4)
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2289: Aspartokinase (EC 2.7.2.4)
Aspartokinase (EC 2.7.2.4)
 
CRON 3.
lysW
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -322
score = 126.98
sequence = AAGATGGGGTAGAGG...

Gene: BH3449: Predicted lysine transporter, NhaC family
*
Bacillus clausii KSM-K16

Site:
position = -264
score = 114.0
sequence = CAGATGGGGTAGAGG...

Gene: ABC2952: Predicted lysine transporter, NhaC family
*
Oceanobacillus iheyensis HTE831

Site:
position = -324
score = 111.22
sequence = TCGGTGAGGTAGAGG...

Gene: OB2369: Predicted lysine transporter, NhaC family
 
Paenibacillus sp. JDR-2
Predicted lysine transporter, NhaC family
 
CRON 4.
lysA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU23380: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_021480: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2068: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Bacillus licheniformis DSM 13

Gene: BLi02486: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1012: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Geobacillus kaustophilus HTA426

Gene: GK2300: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Bacillus cereus ATCC 14579

Site:
position = -361
score = 120.46
sequence = TCAAAGGTAGAGGCC...

Gene: BC1419: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Bacillus halodurans C-125

Site:
position = -295
score = 121.7
sequence = GATGAGGTAGAGGTG...

Gene: BH1544: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Bacillus clausii KSM-K16

Gene: ABC1801: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Oceanobacillus iheyensis HTE831

Gene: OB1833: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2347: Diaminopimelate decarboxylase (EC 4.1.1.20)
Diaminopimelate decarboxylase (EC 4.1.1.20)
 
CRON 5.
lysP
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -295
score = 121.41
sequence = GATGAGGTAGAGGTT...

Gene: BC3052: Lysine-specific permease
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -317
score = 99.4
sequence = GATGAGGTAGAGGTC...

Gene: Pjdr2_2916: Lysine-specific permease
Lysine-specific permease
 
CRON 6.
dapA
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -355
score = 127.95
sequence = AAGTGAGGATAGAGG...

Gene: BH1742: Dihydrodipicolinate synthase (EC 4.2.1.52)
*
Bacillus clausii KSM-K16

Site:
position = -270
score = 96.67
sequence = GTGAGAGTAGAGGCG...

Gene: ABC2030: Dihydrodipicolinate synthase (EC 4.2.1.52)
*
Oceanobacillus iheyensis HTE831

Site:
position = -285
score = 107.21
sequence = TTTTGGATAGAGGTG...

Gene: OB1708: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Paenibacillus sp. JDR-2
Dihydrodipicolinate synthase (EC 4.2.1.52)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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