Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Lysine - Thermotogales

Properties
Regulator type: RNA regulatory element
Name: Lysine
RFAM: RF00168
Regulation mode:
Biological process: Lysine biosynthesis
Effector: Lysine
Phylum: Thermotogae
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Thermotoga maritima MSB8 8 1
Thermotoga sp. RQ2 8 1
Thermotoga neapolitana DSM 4359 8 1
Thermotoga petrophila RKU-1 8 1
Thermotoga naphthophila RKU-10 8 1
Thermotoga lettingae TMO
Thermosipho africanus TCF52B 8 1
Thermosipho melanesiensis BI429 7 1
Fervidobacterium nodosum Rt17-B1
Petrotoga mobilis SJ95 8 1
Thermotogales bacterium TBF 19.5.1 7 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
asd
*
Thermotoga maritima MSB8

Site:
position = -261
score = 90.7
sequence = TTGACCCGACGGAGG...

Gene: TM1523: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
*
Thermotoga sp. RQ2

Site:
position = -267
score = 90.7
sequence = TTGACCCGACGGAGG...

Gene: TRQ2_1417: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
*
Thermotoga neapolitana DSM 4359

Site:
position = -267
score = 88.92
sequence = GACCCGACGGAGGAG...

Gene: CTN_0970: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
*
Thermotoga petrophila RKU-1

Site:
position = -266
score = 85.62
sequence = GACCCGACGGAGGCG...

Gene: Tpet_1269: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
*
Thermotoga naphthophila RKU-10

Site:
position = -266
score = 85.62
sequence = GACCCGACGGAGGCG...

Gene: Tnap_1286: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Thermotoga lettingae TMO
*
Thermosipho africanus TCF52B

Site:
position = -246
score = 125.16
sequence = ATACGATCGGAGGCG...

Gene: THA_170: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
*
Thermosipho melanesiensis BI429

Site:
position = -246
score = 120.39
sequence = ATACGATCGGAGGTG...

Gene: Tmel_1873: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0070: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
*
Petrotoga mobilis SJ95

Site:
position = -253
score = 101.15
sequence = TATTTAAAGCGGAGG...

Gene: Pmob_1226: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
*
Thermotogales bacterium TBF 19.5.1

Site:
position = -259
score = 95.32
sequence = TTTACCCCACAGAGG...

Gene: Kole_0108: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
lysA
 
Thermotoga maritima MSB8

Gene: TM1517: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Thermotoga sp. RQ2

Gene: TRQ2_1411: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0976: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1275: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1292: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Thermotoga lettingae TMO

Gene: Tlet_1265: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Thermosipho africanus TCF52B

Gene: THA_1325: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Thermosipho melanesiensis BI429

Gene: Tmel_1043: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0425: Diaminopimelate decarboxylase (EC 4.1.1.20)
 2
Petrotoga mobilis SJ95

Gene: Pmob_0477: Diaminopimelate decarboxylase (EC 4.1.1.20)

Gene: Pmob_1225: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0871: Diaminopimelate decarboxylase (EC 4.1.1.20)
Diaminopimelate decarboxylase (EC 4.1.1.20)
dapA
 
Thermotoga maritima MSB8

Gene: TM1521: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Thermotoga sp. RQ2

Gene: TRQ2_1415: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0972: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1271: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1288: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Thermotoga lettingae TMO

Gene: Tlet_0733: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Thermosipho africanus TCF52B

Gene: THA_172: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Thermosipho melanesiensis BI429

Gene: Tmel_1875: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0072: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Petrotoga mobilis SJ95

Gene: Pmob_1224: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0106: Dihydrodipicolinate synthase (EC 4.2.1.52)
Dihydrodipicolinate synthase (EC 4.2.1.52)
dapB
 
Thermotoga maritima MSB8

Gene: TM1520: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Thermotoga sp. RQ2

Gene: TRQ2_1414: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0973: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1272: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1289: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Thermotoga lettingae TMO

Gene: Tlet_0732: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Thermosipho africanus TCF52B

Gene: THA_173: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Thermosipho melanesiensis BI429

Gene: Tmel_1876: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0073: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Petrotoga mobilis SJ95

Gene: Pmob_1223: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0105: Dihydrodipicolinate reductase (EC 1.3.1.26)
Dihydrodipicolinate reductase (EC 1.3.1.26)
dapD
 
Thermotoga maritima MSB8

Gene: TM1519: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Thermotoga sp. RQ2

Gene: TRQ2_1413: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0974: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1273: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1290: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Thermotoga lettingae TMO

Gene: Tlet_1948: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Thermosipho africanus TCF52B

Gene: THA_174: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Thermosipho melanesiensis BI429

Gene: Tmel_1877: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0074: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Petrotoga mobilis SJ95

Gene: Pmob_1222: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0104: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
lysC
 
Thermotoga maritima MSB8

Gene: TM1518: Aspartokinase (EC 2.7.2.4)
 
Thermotoga sp. RQ2

Gene: TRQ2_1412: Aspartokinase (EC 2.7.2.4)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0975: Aspartokinase (EC 2.7.2.4)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1274: Aspartokinase (EC 2.7.2.4)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1291: Aspartokinase (EC 2.7.2.4)
 
Thermotoga lettingae TMO

Gene: Tlet_0731: Aspartokinase (EC 2.7.2.4)
 
Thermosipho africanus TCF52B

Gene: THA_175: Aspartokinase (EC 2.7.2.4)
 
Thermosipho melanesiensis BI429

Gene: Tmel_1878: Aspartokinase (EC 2.7.2.4)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0075: Aspartokinase (EC 2.7.2.4)
 
Petrotoga mobilis SJ95

Gene: Pmob_1221: Aspartokinase (EC 2.7.2.4)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0103: Aspartokinase (EC 2.7.2.4)
Aspartokinase (EC 2.7.2.4)
argD
 
Thermotoga maritima MSB8
 
Thermotoga sp. RQ2
 
Thermotoga neapolitana DSM 4359
 
Thermotoga petrophila RKU-1
 
Thermotoga naphthophila RKU-10
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B

Gene: THA_176: Acetylornithine aminotransferase (EC 2.6.1.11)
 
Thermosipho melanesiensis BI429

Gene: Tmel_1879: Acetylornithine aminotransferase (EC 2.6.1.11)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0076: Acetylornithine aminotransferase (EC 2.6.1.11)
 
Petrotoga mobilis SJ95

Gene: Pmob_1220: Acetylornithine aminotransferase (EC 2.6.1.11)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0102: Acetylornithine aminotransferase (EC 2.6.1.11)
Acetylornithine aminotransferase (EC 2.6.1.11)
dapL
 
Thermotoga maritima MSB8

Gene: TM1516: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Thermotoga sp. RQ2

Gene: TRQ2_1410: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0977: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1276: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1293: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B

Gene: THA_1326: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Thermosipho melanesiensis BI429

Gene: Tmel_1044: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0081: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Petrotoga mobilis SJ95

Gene: Pmob_1219: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0532: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
dapF
 
Thermotoga maritima MSB8

Gene: TM1522: Diaminopimelate epimerase (EC 5.1.1.7)
 
Thermotoga sp. RQ2

Gene: TRQ2_1416: Diaminopimelate epimerase (EC 5.1.1.7)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0971: Diaminopimelate epimerase (EC 5.1.1.7)
 
Thermotoga petrophila RKU-1

Gene: Tpet_1270: Diaminopimelate epimerase (EC 5.1.1.7)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_1287: Diaminopimelate epimerase (EC 5.1.1.7)
 
Thermotoga lettingae TMO

Gene: Tlet_1949: Diaminopimelate epimerase (EC 5.1.1.7)
 
Thermosipho africanus TCF52B

Gene: THA_171: Diaminopimelate epimerase (EC 5.1.1.7)
 
Thermosipho melanesiensis BI429

Gene: Tmel_1874: Diaminopimelate epimerase (EC 5.1.1.7)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_0071: Diaminopimelate epimerase (EC 5.1.1.7)
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0107: Diaminopimelate epimerase (EC 5.1.1.7)
Diaminopimelate epimerase (EC 5.1.1.7)
THA_177
 
Thermotoga maritima MSB8
 
Thermotoga sp. RQ2
 
Thermotoga neapolitana DSM 4359
 
Thermotoga petrophila RKU-1
 
Thermotoga naphthophila RKU-10
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B

Gene: THA_177: lipase/acylhydrolase, GDSL family
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
lipase/acylhydrolase, GDSL family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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