Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Lysine - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: Lysine
RFAM: RF00168
Regulation mode:
Biological process: Lysine biosynthesis
Effector: Lysine
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315 9 2
Staphylococcus capitis SK14 9 2
Staphylococcus epidermidis ATCC 12228 9 2
Staphylococcus carnosus subsp. carnosus TM300 9 2
Staphylococcus haemolyticus JCSC1435 9 2
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 9 2
Macrococcus caseolyticus JCSC5402 9 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lysC
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -256
score = 87.03
sequence = TATTTTGATGAGGCG...

Gene: SA1225: Aspartokinase (EC 2.7.2.4)
*
Staphylococcus capitis SK14

Site:
position = -261
score = 92.6
sequence = GATTTTGATGAGGAG...

Gene: STACA0001_1639: Aspartokinase (EC 2.7.2.4)
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -232
score = 98.39
sequence = GATTTTGATGAGGCG...

Gene: SE1073: Aspartokinase (EC 2.7.2.4)
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -261
score = 98.14
sequence = TATTTTGATGAGGCG...

Gene: Sca_1037: Aspartokinase (EC 2.7.2.4)
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -259
score = 103.18
sequence = AAGAAATTGATGAGG...

Gene: SH1518: Aspartokinase (EC 2.7.2.4)
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -262
score = 99.65
sequence = AAGGTTTTGATGAGG...

Gene: SSP1357: Aspartokinase (EC 2.7.2.4)
*
Macrococcus caseolyticus JCSC5402

Site:
position = -244
score = 88.74
sequence = GAAACAGATGAGGCG...

Gene: MCCL_1048: Aspartokinase (EC 2.7.2.4)
Aspartokinase (EC 2.7.2.4)
asd
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1226: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Staphylococcus capitis SK14

Gene: STACA0001_1640: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1074: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1038: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1517: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1356: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1049: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
dapA
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1227: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Staphylococcus capitis SK14

Gene: STACA0001_1641: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1075: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1039: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1516: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1355: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1050: Dihydrodipicolinate synthase (EC 4.2.1.52)
Dihydrodipicolinate synthase (EC 4.2.1.52)
dapB
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1228: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Staphylococcus capitis SK14

Gene: STACA0001_1642: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1076: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1040: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1515: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1354: Dihydrodipicolinate reductase (EC 1.3.1.26)
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1051: Dihydrodipicolinate reductase (EC 1.3.1.26)
Dihydrodipicolinate reductase (EC 1.3.1.26)
dapD
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1229: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Staphylococcus capitis SK14

Gene: STACA0001_1643: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1077: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1041: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1514: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1353: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1052: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
dapL
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1230: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Staphylococcus capitis SK14

Gene: STACA0001_1644: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1078: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1042: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1513: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1352: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1053: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
dapX
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1231: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7)
 
Staphylococcus capitis SK14

Gene: STACA0001_1645: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1079: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1043: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1512: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1351: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7)
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1054: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7)
Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7)
lysA
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1232: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Staphylococcus capitis SK14

Gene: STACA0001_1646: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1080: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1044: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1511: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1350: Diaminopimelate decarboxylase (EC 4.1.1.20)
 
Macrococcus caseolyticus JCSC5402

Gene: MCCL_1055: Diaminopimelate decarboxylase (EC 4.1.1.20)
Diaminopimelate decarboxylase (EC 4.1.1.20)
 
CRON 2.
lysP
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -321
score = 112.83
sequence = AAATTGAGTTAGAGG...

Gene: SA1505: Lysine-specific permease
*
Staphylococcus capitis SK14

Site:
position = -395
score = 113.15
sequence = TTAGAGTTAGAGGTT...

Gene: STACA0001_2345: Lysine-specific permease
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -382
score = 111.56
sequence = AAATAGAGTTAGAGG...

Gene: SE1356: Lysine-specific permease
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -269
score = 105.87
sequence = AAAAAGTGTTAGAGG...

Gene: Sca_1287: Lysine-specific permease
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -334
score = 112.62
sequence = AAAGAGTTAGAGGTT...

Gene: SH1244: Lysine-specific permease
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -383
score = 103.84
sequence = TTTGAGTTAGAGGTT...

Gene: SSP1083: Lysine-specific permease
*
Macrococcus caseolyticus JCSC5402

Site:
position = -171
score = 101.62
sequence = TCGTTGAGGTAGAGG...

Site:
position = -171
score = 101.62
sequence = TCGTTGAGGTAGAGG...

Gene: MCCL_1346: Lysine-specific permease
Lysine-specific permease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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