Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Lysine - Shewanellaceae

Properties
Regulator type: RNA regulatory element
Name: Lysine
RFAM: RF00168
Regulation mode:
Biological process: Lysine biosynthesis
Effector: Lysine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 5 3
Shewanella putrefaciens CN-32 2 2
Shewanella sp W3-18-1 2 2
Shewanella sp ANA-3 3 2
Shewanella sp MR-4 3 2
Shewanella sp MR-7 3 2
Shewanella baltica OS155 3 2
Shewanella denitrificans OS217 2 2
Shewanella frigidimarina NCIMB 400 2 2
Shewanella amazonensis SB2B 3 2
Shewanella loihica PV-4 3 2
Shewanella pealeana ATCC 700345 4 3
Shewanella halifaxensis HAW-EB4 4 3
Shewanella piezotolerans WP3 3 2
Shewanella sediminis HAW-EB3 3 2
Shewanella woodyi ATCC 51908 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lysW
*3
Shewanella oneidensis MR-1

Site:
position = -257
score = 124.27
sequence = CTTTAAGTAGAGGCG...

Gene: SO_1007: Predicted lysine transporter, NhaC family

Site:
position = -277
score = 108.87
sequence = TCTTAGAAGTAGAGA...

Gene: SO_3142.3: Predicted lysine transporter, NhaC family

Gene: SO_3142.2: Predicted lysine transporter, NhaC family
*
Shewanella putrefaciens CN-32

Site:
position = -278
score = 124.44
sequence = TCTTAGAAGTAGAGG...

Gene: Sputcn32_2509: Predicted lysine transporter, NhaC family
*
Shewanella sp W3-18-1

Site:
position = -276
score = 124.44
sequence = TTAGAAGTAGAGGCG...

Gene: Sputw3181_1499: Predicted lysine transporter, NhaC family
*
Shewanella sp ANA-3

Site:
position = -275
score = 124.79
sequence = TTAGAAGTAGAGGCG...

Gene: Shewana3_1407: Predicted lysine transporter, NhaC family
*
Shewanella sp MR-4

Site:
position = -275
score = 124.79
sequence = TTAGAAGTAGAGGCG...

Gene: Shewmr4_1354: Predicted lysine transporter, NhaC family
*
Shewanella sp MR-7

Site:
position = -275
score = 124.79
sequence = TTAGAAGTAGAGGCG...

Gene: Shewmr7_1419: Predicted lysine transporter, NhaC family
*
Shewanella baltica OS155

Site:
position = -277
score = 117.55
sequence = TCTTAGAAGTAGAGG...

Gene: Sbal_2845: Predicted lysine transporter, NhaC family
*
Shewanella denitrificans OS217

Site:
position = -262
score = 97.89
sequence = CCTTTATGGTAGAGG...

Gene: Sden_2537: Predicted lysine transporter, NhaC family
*
Shewanella frigidimarina NCIMB 400

Site:
position = -301
score = 105.86
sequence = CAACAAAAGTAGAGG...

Gene: Sfri_2746: Predicted lysine transporter, NhaC family
*
Shewanella amazonensis SB2B

Site:
position = -275
score = 105.96
sequence = TCCTGAGTAGAGGTG...

Gene: Sama_1171: Predicted lysine transporter, NhaC family
*
Shewanella loihica PV-4

Site:
position = -296
score = 103.31
sequence = CCTGAGACGTAGAGG...

Gene: Shew_2582: Predicted lysine transporter, NhaC family
*2
Shewanella pealeana ATCC 700345

Site:
position = -301
score = 104.37
sequence = CCTGAGAAGTAGAGG...

Gene: Spea_2853: Predicted lysine transporter, NhaC family

Site:
position = -257
score = 127.15
sequence = TCCTTTGAGTAGAGG...

Gene: Spea_3259: Predicted lysine transporter, NhaC family
*2
Shewanella halifaxensis HAW-EB4

Site:
position = -256
score = 126.24
sequence = TCCTTTGAGTAGAGG...

Gene: Shal_3334: Predicted lysine transporter, NhaC family

Site:
position = -302
score = 106.12
sequence = CCTGAGAAGTAGAGG...

Gene: Shal_2943: Predicted lysine transporter, NhaC family
*
Shewanella piezotolerans WP3

Site:
position = -302
score = 101.03
sequence = CCTTAGAAGTAGAGG...

Gene: swp_3470: Predicted lysine transporter, NhaC family
*
Shewanella sediminis HAW-EB3

Site:
position = -300
score = 109.77
sequence = TGAGAAGTAGAGGTG...

Gene: Ssed_1447: Predicted lysine transporter, NhaC family
*
Shewanella woodyi ATCC 51908

Site:
position = -327
score = 108.95
sequence = CCTGAGAAGTAGAGG...

Gene: Swoo_3234: Predicted lysine transporter, NhaC family
Predicted lysine transporter, NhaC family
 
CRON 2.
lysC
*
Shewanella oneidensis MR-1

Site:
position = -319
score = 84.19
sequence = AAGGAACAGAAGAGG...

Gene: SO_3986: Aspartokinase (EC 2.7.2.4)
*
Shewanella putrefaciens CN-32

Site:
position = -324
score = 85.25
sequence = GGAACAGAAGAGGAG...

Gene: Sputcn32_0680: Aspartokinase (EC 2.7.2.4)
*
Shewanella sp W3-18-1

Site:
position = -323
score = 85.25
sequence = AAGGAACAGAAGAGG...

Gene: Sputw3181_3491: Aspartokinase (EC 2.7.2.4)
*
Shewanella sp ANA-3

Site:
position = -317
score = 85.22
sequence = GGAACAGAAGAGGAG...

Gene: Shewana3_0652: Aspartokinase (EC 2.7.2.4)
*
Shewanella sp MR-4

Site:
position = -317
score = 85.22
sequence = GGAACAGAAGAGGAG...

Gene: Shewmr4_0653: Aspartokinase (EC 2.7.2.4)
*
Shewanella sp MR-7

Site:
position = -319
score = 85.22
sequence = AAGGAACAGAAGAGG...

Gene: Shewmr7_3369: Aspartokinase (EC 2.7.2.4)
*
Shewanella baltica OS155

Site:
position = -324
score = 88.81
sequence = GGAACAGAAGAGGAG...

Gene: Sbal_0788: Aspartokinase (EC 2.7.2.4)
*
Shewanella denitrificans OS217

Site:
position = -349
score = 84.14
sequence = GAGGCACAGAAGAGG...

Gene: Sden_2982: Aspartokinase (EC 2.7.2.4)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -308
score = 85.44
sequence = GGAACAGAAGAGGAG...

Gene: Sfri_0535: Aspartokinase (EC 2.7.2.4)
*
Shewanella amazonensis SB2B

Site:
position = -313
score = 81.67
sequence = GGCACAGAAGAGGAG...

Gene: Sama_0603: Aspartokinase (EC 2.7.2.4)
*
Shewanella loihica PV-4

Site:
position = -305
score = 95.19
sequence = GATACAGAAGAGGAG...

Gene: Shew_0779: Aspartokinase (EC 2.7.2.4)
*
Shewanella pealeana ATCC 700345

Site:
position = -327
score = 77.77
sequence = AGTGCAGAAGAGGAG...

Gene: Spea_0735: Aspartokinase (EC 2.7.2.4)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -326
score = 80.22
sequence = ACTACAGAAGAGGAG...

Gene: Shal_0788: Aspartokinase (EC 2.7.2.4)
*
Shewanella piezotolerans WP3

Site:
position = -316
score = 81.63
sequence = TGAGTACAGAAGAGG...

Gene: swp_4345: Aspartokinase (EC 2.7.2.4)
*
Shewanella sediminis HAW-EB3

Site:
position = -309
score = 79.49
sequence = GGTACAGAAGAGGAG...

Gene: Ssed_0817: Aspartokinase (EC 2.7.2.4)
*
Shewanella woodyi ATCC 51908

Site:
position = -309
score = 79.03
sequence = GGTACAGAAGAGGTG...

Gene: Swoo_3764: Aspartokinase (EC 2.7.2.4)
Aspartokinase (EC 2.7.2.4)
dapA
 
Shewanella oneidensis MR-1

Gene: SO_3985: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_0653: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella sp MR-4

Gene: Shewmr4_0654: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella sp MR-7

Gene: Shewmr7_3368: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella baltica OS155

Gene: Sbal_0789: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0536: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella amazonensis SB2B

Gene: Sama_0604: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella loihica PV-4

Gene: Shew_0780: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella pealeana ATCC 700345

Gene: Spea_0736: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_0789: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella piezotolerans WP3

Gene: swp_4344: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0818: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3765: Dihydrodipicolinate synthase (EC 4.2.1.52)
Dihydrodipicolinate synthase (EC 4.2.1.52)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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