Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog UxuR - Psychromonadaceae/Aeromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: Glucuronate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Psychromonas ingrahamii 37 12 4
Psychromonas sp. CNPT3 3 2
Moritella sp. PE36
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Aeromonas salmonicida subsp. salmonicida A449
Tolumonas auensis DSM 9187 10 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uxuQ
*
Psychromonas ingrahamii 37

Site:
position = -157
score = 4.34097
sequence = TGATTGGTCGACCAACTG

Site:
position = -191
score = 5.44865
sequence = AAATTGGTTGACCTATAT

Site:
position = -46
score = 5.1485
sequence = AAATTGGTTAACCGAAAA

Gene: Ping_0134: predicted glucuronate TRAP transporter, small subunit
 
Psychromonas sp. CNPT3

Gene: PCNPT3_08360: predicted glucuronate TRAP transporter, small subunit
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
predicted glucuronate TRAP transporter, small subunit
uxuM
 
Psychromonas ingrahamii 37

Gene: Ping_0133: predicted glucuronate TRAP transporter, large subunit
 
Psychromonas sp. CNPT3

Gene: PCNPT3_08355: predicted glucuronate TRAP transporter, large subunit
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
predicted glucuronate TRAP transporter, large subunit
uxuB
 
Psychromonas ingrahamii 37

Gene: Ping_0132: D-mannonate oxidoreductase (EC 1.1.1.57)
 
Psychromonas sp. CNPT3

Gene: PCNPT3_08350: D-mannonate oxidoreductase (EC 1.1.1.57)
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187

Gene: Tola_2883: D-mannonate oxidoreductase (EC 1.1.1.57)
D-mannonate oxidoreductase (EC 1.1.1.57)
uxaC
 
Psychromonas ingrahamii 37

Gene: Ping_0131: Uronate isomerase (EC 5.3.1.12)
 
Psychromonas sp. CNPT3

Gene: PCNPT3_08345: Uronate isomerase (EC 5.3.1.12)
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
*2
Tolumonas auensis DSM 9187

Gene: Tola_2882: Uronate isomerase (EC 5.3.1.12)

Site:
position = -103
score = 4.63904
sequence = TAATTGGTATAACACATT

Gene: Tola_3025: Uronate isomerase (EC 5.3.1.12)
Uronate isomerase (EC 5.3.1.12)
kdgK
 
Psychromonas ingrahamii 37

Gene: Ping_0130: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
eda
 
Psychromonas ingrahamii 37

Gene: Ping_0129: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Ping_0128
 
Psychromonas ingrahamii 37

Gene: Ping_0128: hypothetical protein
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
hypothetical protein
ygjV
 
Psychromonas ingrahamii 37

Gene: Ping_0127: Conserved hypothetical protein
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187

Gene: Tola_3028: Conserved hypothetical protein
Conserved hypothetical protein
uxaB
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187

Gene: Tola_3026: Altronate oxidoreductase
Altronate oxidoreductase
uxaA
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187

Gene: Tola_3027: Altronate dehydratase
Altronate dehydratase
uxuA
 
Psychromonas ingrahamii 37

Gene: Ping_0136: Mannonate dehydratase (EC 4.2.1.8)
 
Psychromonas sp. CNPT3

Gene: PCNPT3_08375: Mannonate dehydratase (EC 4.2.1.8)
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
*
Tolumonas auensis DSM 9187

Site:
position = -244
score = 4.30516
sequence = CTGCTGGTCAACCAATTG

Site:
position = -77
score = 5.14262
sequence = ATATTGGTCGACCAGTTG

Gene: Tola_2884: Mannonate dehydratase (EC 4.2.1.8)
Mannonate dehydratase (EC 4.2.1.8)
uxuP
*
Psychromonas ingrahamii 37

Site:
position = -145
score = 4.36094
sequence = CAGTTGGTCGACCAATCA

Site:
position = -111
score = 5.43805
sequence = ATATAGGTCAACCAATTT

Site:
position = -256
score = 5.31833
sequence = TTTTCGGTTAACCAATTT

Gene: Ping_0135: predicted glucuronate TRAP transporter, periplasmic subunit
*
Psychromonas sp. CNPT3

Site:
position = -135
score = 5.95043
sequence = AAATTGGTAAACCAATTA

Gene: PCNPT3_08365: predicted glucuronate TRAP transporter, periplasmic subunit
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
predicted glucuronate TRAP transporter, periplasmic subunit
uxuR
*
Psychromonas ingrahamii 37

Site:
position = -42
score = 5.12352
sequence = TTATTGGTTGACCAAAGT

Gene: Ping_0138: D-glucuronate repressor, GntR family
*
Psychromonas sp. CNPT3

Site:
position = -61
score = 6.1786
sequence = AAATTGGTAAACCAATTT

Gene: PCNPT3_08370: D-glucuronate repressor, GntR family
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
*
Tolumonas auensis DSM 9187

Site:
position = -66
score = 5.42651
sequence = TTTTTGGTTGACCAATTC

Gene: Tola_2887: D-glucuronate repressor, GntR family
D-glucuronate repressor, GntR family
 
CRON 2.
bglX
*
Psychromonas ingrahamii 37

Site:
position = -199
score = 5.04961
sequence = TAATTGGTTGACCTAATG

Site:
position = -75
score = 5.68877
sequence = TAATTGGTTAACCAAATG

Gene: Ping_0139: Periplasmic beta-glucosidase precursor
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
Periplasmic beta-glucosidase precursor
 
CRON 3.
lfaT
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
*
Tolumonas auensis DSM 9187

Site:
position = -226
score = 4.89639
sequence = CAACTGGTCGACCAATAT

Site:
position = -59
score = 4.36423
sequence = CAATTGGTTGACCAGCAG

Gene: Tola_2885: putative hexuronate transporter, MFS family
putative hexuronate transporter, MFS family
lfaA
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187

Gene: Tola_2886: Alpha-glucosidase (EC 3.2.1.20)
Alpha-glucosidase (EC 3.2.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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