Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog UxuR - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: Glucuronate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 28 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio vulnificus CMCP6 10 3
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633 10 4
Vibrio shilonii AK1 12 3
Vibrio splendidus LGP32
Vibrio fischeri ES114
Vibrio salmonicida LFI1238
Vibrio angustum S14
Photobacterium profundum SS9 9 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uxuR
 
Vibrio cholerae O1 biovar eltor str. N16961
*
Vibrio vulnificus CMCP6

Site:
position = -50
score = 5.45126
sequence = ATATAGGTTGACCAATTA

Gene: VV21065: Uxu operon transcriptional regulator, GntR family
 
Vibrio harveyi ATCC BAA-1116
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -50
score = 5.04886
sequence = ATAGAGGTTGACCAATTG

Gene: VPA1701: Uxu operon transcriptional regulator, GntR family
*
Vibrio shilonii AK1

Site:
position = -77
score = 5.51938
sequence = TAATTGGTCAACCAATTG

Site:
position = -65
score = 5.79306
sequence = CAATTGGTTGACCAATTT

Gene: VSAK1_20694: Uxu operon transcriptional regulator, GntR family
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -153
score = 5.4112
sequence = AAAGAGGTTGACCAATTT

Gene: PBPRB1875: Uxu operon transcriptional regulator, GntR family
Uxu operon transcriptional regulator, GntR family
uxuA
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21064: Mannonate dehydratase (EC 4.2.1.8)
 
Vibrio harveyi ATCC BAA-1116
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -140
score = 4.88163
sequence = AAAACGGTTAACCACATT

Gene: VPA1700: Mannonate dehydratase (EC 4.2.1.8)
 
Vibrio shilonii AK1

Gene: VSAK1_20699: Mannonate dehydratase (EC 4.2.1.8)
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB1874: Mannonate dehydratase (EC 4.2.1.8)
Mannonate dehydratase (EC 4.2.1.8)
 
CRON 2.
uxuQ
 
Vibrio cholerae O1 biovar eltor str. N16961
*
Vibrio vulnificus CMCP6

Site:
position = -169
score = 5.91725
sequence = AAATTGGTTAACCAATCT

Site:
position = -54
score = 5.63879
sequence = ACATTGGTAAACCAATTG

Site:
position = -203
score = 5.28074
sequence = AAATTGATTGACCAAAAT

Gene: VV21067: predicted TRAP-type glucuronate transporter, small membrane subunit
 
Vibrio harveyi ATCC BAA-1116
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -163
score = 6.02139
sequence = AAATTGGTTAACCAATTC

Site:
position = -197
score = 5.28074
sequence = AAATTGATTGACCAAAAT

Site:
position = -48
score = 5.63879
sequence = ACATTGGTAAACCAATTG

Gene: VPA1703: predicted TRAP-type glucuronate transporter, small membrane subunit
*
Vibrio shilonii AK1

Site:
position = -168
score = 5.26327
sequence = GAATTGGTTGACCAATGT

Gene: VSAK1_20679: predicted TRAP-type glucuronate transporter, small membrane subunit
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -54
score = 5.21432
sequence = ACATTGGTTAACCAAACG

Site:
position = -167
score = 5.58338
sequence = ATATTGGTCAACCAATTC

Site:
position = -201
score = 5.05461
sequence = CAATTGGTTGACCTATAT

Gene: PBPRB1878: predicted TRAP-type glucuronate transporter, small membrane subunit
predicted TRAP-type glucuronate transporter, small membrane subunit
uxuM
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21068: predicted TRAP-type glucuronate transporter, large membrane subunit
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VPA1704: predicted TRAP-type glucuronate transporter, large membrane subunit
 
Vibrio shilonii AK1

Gene: VSAK1_20674: predicted TRAP-type glucuronate transporter, large membrane subunit
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB1879: predicted TRAP-type glucuronate transporter, large membrane subunit
predicted TRAP-type glucuronate transporter, large membrane subunit
VSAK1_20669
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1

Gene: VSAK1_20669: hypothetical protein
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
hypothetical protein
uxuB
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21069: D-mannonate oxidoreductase (EC 1.1.1.57)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VPA1705: D-mannonate oxidoreductase (EC 1.1.1.57)
 
Vibrio shilonii AK1

Gene: VSAK1_20664: D-mannonate oxidoreductase (EC 1.1.1.57)
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB1880: D-mannonate oxidoreductase (EC 1.1.1.57)
D-mannonate oxidoreductase (EC 1.1.1.57)
uxaC
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21070: Uronate isomerase (EC 5.3.1.12)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VPA1706: Uronate isomerase (EC 5.3.1.12)
 
Vibrio shilonii AK1

Gene: VSAK1_20659: Uronate isomerase (EC 5.3.1.12)
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -61
score = 4.42803
sequence = CCATAGGTTCACCAATCT

Gene: PBPRB1515: Uronate isomerase (EC 5.3.1.12)
Uronate isomerase (EC 5.3.1.12)
kdgK
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21071: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VPA1707: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
 
Vibrio shilonii AK1

Gene: VSAK1_20654: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
eda
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21072: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VPA1708: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Vibrio shilonii AK1

Gene: VSAK1_20649: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
VIBHAR_05661
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1

Gene: VSAK1_20644: hypothetical protein
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
Glutamate racemase (EC 5.1.1.3)
ygjV
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV21073: Conserved hypothetical protein
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VPA1709: Conserved hypothetical protein
 
Vibrio shilonii AK1

Gene: VSAK1_20639: Conserved hypothetical protein
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB1884: Conserved hypothetical protein
Conserved hypothetical protein
uxaB
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB1516: Altronate oxidoreductase (EC 1.1.1.58)
Altronate oxidoreductase (EC 1.1.1.58)
uxaA
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB1517: Altronate hydrolase (EC 4.2.1.7)
Altronate hydrolase (EC 4.2.1.7)
 
CRON 3.
uxuP
 
Vibrio cholerae O1 biovar eltor str. N16961
*
Vibrio vulnificus CMCP6

Site:
position = -182
score = 5.05865
sequence = ATTTTGGTCAATCAATTT

Site:
position = -78
score = 4.57359
sequence = ACATTGGACAACCAATCC

Site:
position = -216
score = 5.8229
sequence = AGATTGGTTAACCAATTT

Gene: VV21066: predicted TRAP-type glucuronate transporter, periplasmic subunit
 
Vibrio harveyi ATCC BAA-1116
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -33
score = 5.08358
sequence = ATATTGGATAACCAATCC

Site:
position = -136
score = 5.05865
sequence = ATTTTGGTCAATCAATTT

Site:
position = -170
score = 5.97987
sequence = GAATTGGTTAACCAATTT

Gene: VPA1702: predicted TRAP-type glucuronate transporter, periplasmic subunit
*
Vibrio shilonii AK1

Site:
position = -158
score = 5.40591
sequence = ACATTGGTCAACCAATTC

Site:
position = -66
score = 5.39759
sequence = TAATTGGTTAACCGAATT

Gene: VSAK1_20684: predicted TRAP-type glucuronate transporter, periplasmic subunit
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
*2
Photobacterium profundum SS9

Gene: PBPRB1876: predicted TRAP-type glucuronate transporter, periplasmic subunit

Site:
position = -192
score = 4.57464
sequence = CGTTTGGTTAACCAATGT

Site:
position = -45
score = 5.1812
sequence = ATATAGGTCAACCAATTG

Site:
position = -79
score = 5.69831
sequence = GAATTGGTTGACCAATAT

Gene: PBPRB1877: predicted TRAP-type glucuronate transporter, periplasmic subunit
predicted TRAP-type glucuronate transporter, periplasmic subunit
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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