Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Desulfuromonadales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 56 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Geobacter metallireducens GS-15 10 5
Geobacter sulfurreducens PCA 10 5
Geobacter uraniumreducens Rf4 7 4
Geobacter sp. FRC-32 10 5
Geobacter sp. M21 7 4
Geobacter lovleyi SZ 4 3
Pelobacter propionicus DSM 2379 11 5
Pelobacter carbinolicus str. DSM 2380 5 3
Desulfuromonas acetoxidans DSM 684 8 5
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nifR
*
Geobacter metallireducens GS-15

Site:
position = -46
score = 5.02959
sequence = TGCTTAAATTTTAAGCA

Gene: Gmet_2561: Predicted oxidoreductase, FAD binding
*
Geobacter sulfurreducens PCA

Site:
position = -41
score = 5.2211
sequence = TGCCTAAATTTTAAGCA

Gene: GSU1005: Predicted oxidoreductase, FAD binding
*
Geobacter uraniumreducens Rf4

Site:
position = 9
score = 5.30572
sequence = TGCCCAAAAAATAGGCA

Gene: Gura_0914: Predicted oxidoreductase, FAD binding
*
Geobacter sp. FRC-32

Site:
position = -42
score = 5.38266
sequence = TGCCCAAAATTTAGGCA

Gene: Geob_1718: Predicted oxidoreductase, FAD binding
*
Geobacter sp. M21

Site:
position = -36
score = 5.11422
sequence = TGCTCATTTTTTAGGCA

Gene: GM21_1403: Predicted oxidoreductase, FAD binding
 
Geobacter lovleyi SZ

Gene: Glov_2788: Predicted oxidoreductase, FAD binding
*
Pelobacter propionicus DSM 2379

Site:
position = -66
score = 5.38266
sequence = TGCCCAAATTTTAGGCA

Gene: Ppro_3077: Predicted oxidoreductase, FAD binding
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_1992: Predicted oxidoreductase, FAD binding
*
Desulfuromonas acetoxidans DSM 684

Site:
position = -10
score = 5.11422
sequence = TGCCTAAATAATGAGCA

Gene: Dace_0518: Predicted oxidoreductase, FAD binding
Predicted oxidoreductase, FAD binding
ntrB
 
Geobacter metallireducens GS-15

Gene: Gmet_2562: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Geobacter sulfurreducens PCA

Gene: GSU1004: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Geobacter uraniumreducens Rf4

Gene: Gura_0915: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Geobacter sp. FRC-32

Gene: Geob_1719: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Geobacter sp. M21

Gene: GM21_1404: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Geobacter lovleyi SZ

Gene: Glov_2787: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Pelobacter propionicus DSM 2379

Gene: Ppro_3078: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_1993: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_0519: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Geobacter metallireducens GS-15

Gene: Gmet_2563: Nitrogen regulation protein NR(I), Fis family
 
Geobacter sulfurreducens PCA

Gene: GSU1003: Nitrogen regulation protein NR(I), Fis family
 
Geobacter uraniumreducens Rf4

Gene: Gura_0916: Nitrogen regulation protein NR(I), Fis family
 
Geobacter sp. FRC-32

Gene: Geob_1720: Nitrogen regulation protein NR(I), Fis family
 
Geobacter sp. M21

Gene: GM21_1405: Nitrogen regulation protein NR(I), Fis family
 
Geobacter lovleyi SZ

Gene: Glov_2786: Nitrogen regulation protein NR(I), Fis family
 
Pelobacter propionicus DSM 2379

Gene: Ppro_3079: Nitrogen regulation protein NR(I), Fis family
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_1994: Nitrogen regulation protein NR(I), Fis family
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_0520: Nitrogen regulation protein NR(I), Fis family
Nitrogen regulation protein NR(I), Fis family
 
CRON 2.
gdhA
*
Geobacter metallireducens GS-15

Site:
position = -152
score = 4.53351
sequence = TGCCGCAAATTCGGGCA

Gene: Gmet_1186: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
*
Geobacter sulfurreducens PCA

Site:
position = -151
score = 4.75005
sequence = TGCCGATAAATCAGGCA

Site:
position = -110
score = 4.51226
sequence = TGCACAGTTTTGGTGCA

Site:
position = -88
score = 4.76339
sequence = TGCATAAAATGCAGGCA

Gene: GSU1305: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
*
Geobacter uraniumreducens Rf4

Site:
position = -168
score = 4.35857
sequence = TGCTTAATATTTAAGCT

Site:
position = -118
score = 4.96651
sequence = TGCCTATTTATGGTGCA

Gene: Gura_2800: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
*
Geobacter sp. FRC-32

Site:
position = -191
score = 4.53763
sequence = TGAATAATTAATGTGCA

Site:
position = -172
score = 4.12201
sequence = TGCTTCTTGTTTGAGCA

Site:
position = -98
score = 4.75484
sequence = TGCCTGTTTATGGTGCA

Gene: Geob_2399: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
*
Geobacter sp. M21

Site:
position = -143
score = 4.8294
sequence = TGCATGTTTTTCGGGCA

Site:
position = -100
score = 4.25118
sequence = TGCATACAAATGTGGCA

Gene: GM21_0175: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
*
Geobacter lovleyi SZ

Site:
position = -136
score = 4.28595
sequence = TGTCTGCTTTTTGTGCA

Site:
position = -103
score = 4.72796
sequence = TGTATATTTAATATGCA

Site:
position = -84
score = 4.16044
sequence = TGACTTAATATTAGGCA

Gene: Glov_0573: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
*
Pelobacter propionicus DSM 2379

Site:
position = -101
score = 4.17622
sequence = TGCCGATAAAATGTGCT

Gene: Ppro_3497: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
Pelobacter carbinolicus str. DSM 2380
*
Desulfuromonas acetoxidans DSM 684

Site:
position = -126
score = 4.58219
sequence = TGTTTATAAAATGTGCA

Gene: Dace_2426: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
CRON 3.
nifEN
*
Geobacter metallireducens GS-15

Site:
position = -217
score = 4.89212
sequence = TGCATAAAATGTGTGCA

Gene: Gmet_0669: Nitrogenase FeMo-cofactor scaffold and assembly protein
*
Geobacter sulfurreducens PCA

Site:
position = -215
score = 5.06123
sequence = TGCATAAAAAATGAGCA

Gene: GSU2806: Nitrogenase FeMo-cofactor scaffold and assembly protein
*
Geobacter uraniumreducens Rf4

Site:
position = -228
score = 5.30732
sequence = TGCCCAATAATTGGGCA

Gene: Gura_1201: Nitrogenase FeMo-cofactor scaffold and assembly protein
*
Geobacter sp. FRC-32

Site:
position = -219
score = 5.32842
sequence = TGCCCAAATTATAGGCA

Gene: Geob_2581: Nitrogenase FeMo-cofactor scaffold and assembly protein
 
Geobacter sp. M21

Gene: GM21_2142: Nitrogenase FeMo-cofactor scaffold and assembly protein
 
Geobacter lovleyi SZ

Gene: Glov_0639: Nitrogenase FeMo-cofactor scaffold and assembly protein
*
Pelobacter propionicus DSM 2379

Site:
position = -230
score = 4.63337
sequence = TGCAAAAAAAACAGGCA

Gene: Ppro_3491: Nitrogenase FeMo-cofactor scaffold and assembly protein
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_0313: Nitrogenase FeMo-cofactor scaffold and assembly protein
*
Desulfuromonas acetoxidans DSM 684

Site:
position = -310
score = 4.46247
sequence = TGCTTAAACTTTGAGCA

Gene: Dace_0726: Nitrogenase FeMo-cofactor scaffold and assembly protein
Nitrogenase FeMo-cofactor scaffold and assembly protein
 
CRON 4.
Gmet_0693
*
Geobacter metallireducens GS-15

Site:
position = -349
score = 5.00699
sequence = TGCTTATATAATGTGCA

Gene: Gmet_0693: Conserved hypothetical protein
*
Geobacter sulfurreducens PCA

Site:
position = -329
score = 5.25273
sequence = TGCATAAATAATGGGCA

Gene: GSU0938: Conserved hypothetical protein
 
Geobacter uraniumreducens Rf4

Gene: Gura_3367: Conserved hypothetical protein
*
Geobacter sp. FRC-32

Site:
position = -323
score = 4.42181
sequence = TGCACAAAAAATAATCA

Gene: Geob_1817: Conserved hypothetical protein
*
Geobacter sp. M21

Site:
position = -311
score = 4.06724
sequence = TGCACAAACAATAGGCT

Gene: GM21_3137: Conserved hypothetical protein
*
Geobacter lovleyi SZ

Site:
position = -268
score = 4.10953
sequence = TGCAAGATAGTTGGGCA

Site:
position = -213
score = 4.07814
sequence = TGCTGAATAAATGGTCA

Gene: Glov_3332: Conserved hypothetical protein
*
Pelobacter propionicus DSM 2379

Site:
position = -332
score = 4.55688
sequence = TGCCTGTTTTTTGCGCA

Site:
position = -241
score = 4.8049
sequence = TGTATAAAAAATATGCA

Gene: Ppro_0484: Conserved hypothetical protein
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
Conserved hypothetical protein
glnK1
 
Geobacter metallireducens GS-15

Gene: Gmet_0694: Nitrogen regulatory protein P-II
 
Geobacter sulfurreducens PCA

Gene: GSU0939: Nitrogen regulatory protein P-II
 
Geobacter uraniumreducens Rf4

Gene: Gura_3366: Nitrogen regulatory protein P-II
 
Geobacter sp. FRC-32

Gene: Geob_1818: Nitrogen regulatory protein P-II
 
Geobacter sp. M21

Gene: GM21_2709: Nitrogen regulatory protein P-II
 
Geobacter lovleyi SZ

Gene: Glov_0472: Nitrogen regulatory protein P-II
 
Pelobacter propionicus DSM 2379

Gene: Ppro_0485: Nitrogen regulatory protein P-II
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
Nitrogen regulatory protein P-II
amtB2
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379

Gene: Ppro_0486: Ammonium transporter
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_1022: Ammonium transporter
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_2802: Ammonium transporter
Ammonium transporter
amtB
 
Geobacter metallireducens GS-15

Gene: Gmet_0695: Ammonium transporter
 
Geobacter sulfurreducens PCA

Gene: GSU0940: Ammonium transporter
 
Geobacter uraniumreducens Rf4

Gene: Gura_3365: Ammonium transporter
 
Geobacter sp. FRC-32

Gene: Geob_1819: Ammonium transporter
 
Geobacter sp. M21

Gene: GM21_2708: Ammonium transporter
 
Geobacter lovleyi SZ

Gene: Glov_0471: Ammonium transporter
 
Pelobacter propionicus DSM 2379

Gene: Ppro_0487: Ammonium transporter
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -263
score = 4.68033
sequence = TGCCTCCATTATGGGCA

Site:
position = -242
score = 4.49607
sequence = TGCCTATTTTGGAAGCA

Gene: Pcar_2589: Ammonium transporter
*
Desulfuromonas acetoxidans DSM 684

Site:
position = -219
score = 4.88239
sequence = TGCCCGTTTTTCAGGCA

Gene: Dace_1145: Ammonium transporter
Ammonium transporter
glnK2
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -241
score = 4.35132
sequence = TGCTCAAAATTTAAGCC

Gene: Pcar_1021: Nitrogen regulatory protein P-II
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_2803: Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II
 
CRON 5.
glnB
*
Geobacter metallireducens GS-15

Site:
position = -259
score = 4.27226
sequence = TGCTTCTGATTTGTGCA

Gene: Gmet_1351: Nitrogen regulatory protein P-II
*
Geobacter sulfurreducens PCA

Site:
position = -266
score = 4.42429
sequence = TGCCTGATAATTGTGCT

Site:
position = -253
score = 4.12853
sequence = TGCTCATTTGGTATGCA

Gene: GSU1836: Nitrogen regulatory protein P-II
*
Geobacter uraniumreducens Rf4

Site:
position = -266
score = 4.19047
sequence = TGCCCATCCATTGGGCA

Site:
position = -234
score = 4.27439
sequence = TGCTCAATTTATAAGCT

Gene: Gura_2229: Nitrogen regulatory protein P-II
*
Geobacter sp. FRC-32

Site:
position = -255
score = 4.47479
sequence = TGGTTATATATTGGGCA

Site:
position = -224
score = 4.6574
sequence = TGCCTAATTTATGGGCT

Gene: Geob_2994: Nitrogen regulatory protein P-II
*
Geobacter sp. M21

Site:
position = -158
score = 4.19591
sequence = TGCCGGAATGTTGTGCA

Gene: GM21_1183: Nitrogen regulatory protein P-II
*
Geobacter lovleyi SZ

Site:
position = -154
score = 4.27409
sequence = TGCCTAATTTGTGTGCT

Gene: Glov_1879: Nitrogen regulatory protein P-II
*
Pelobacter propionicus DSM 2379

Site:
position = -238
score = 5.0195
sequence = TGCCTAATTAAGGGGCA

Site:
position = -207
score = 4.32007
sequence = TGCCTATAATCAAGGCA

Gene: Ppro_1680: Nitrogen regulatory protein P-II
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -306
score = 4.07995
sequence = TGTTTAAATAATAGTCA

Site:
position = -274
score = 4.93516
sequence = TGTCTAAATATTGGGCA

Gene: Pcar_1500: Nitrogen regulatory protein P-II
*
Desulfuromonas acetoxidans DSM 684

Site:
position = -254
score = 4.27107
sequence = TGCTTAAAATGTCAGCA

Site:
position = -222
score = 4.07614
sequence = TGAGTAAATAATGTGCA

Gene: Dace_1046: Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II
glnA
 
Geobacter metallireducens GS-15

Gene: Gmet_1352: Glutamine synthetase type I (EC 6.3.1.2)
 
Geobacter sulfurreducens PCA

Gene: GSU1835: Glutamine synthetase type I (EC 6.3.1.2)
 
Geobacter uraniumreducens Rf4

Gene: Gura_2228: Glutamine synthetase type I (EC 6.3.1.2)
 
Geobacter sp. FRC-32

Gene: Geob_2993: Glutamine synthetase type I (EC 6.3.1.2)
 
Geobacter sp. M21

Gene: GM21_1184: Glutamine synthetase type I (EC 6.3.1.2)
 
Geobacter lovleyi SZ

Gene: Glov_1880: Glutamine synthetase type I (EC 6.3.1.2)
 
Pelobacter propionicus DSM 2379

Gene: Ppro_1681: Glutamine synthetase type I (EC 6.3.1.2)
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_1501: Glutamine synthetase type I (EC 6.3.1.2)
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_1045: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD