Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Sphingomonadales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 25 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Erythrobacter litoralis HTCC2594 9 3
Erythrobacter sp. NAP1 9 3
Novosphingobium aromaticivorans DSM 12444 9 3
Sphingopyxis alaskensis RB2256 9 3
Sphingobium japonicum UT26S 9 3
Sphingomonas wittichii RW1 7 3
Zymomonas mobilis subsp. mobilis ZM4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glnB
*
Erythrobacter litoralis HTCC2594

Site:
position = -237
score = 5.75215
sequence = TGCCTAAATTTTAAGCA

Gene: ELI_01665: Glutamate synthase, large chain (EC 1.4.1.13)
*
Erythrobacter sp. NAP1

Site:
position = -208
score = 5.9175
sequence = TGCCCAAAATTTAGGCA

Gene: NAP1_00830: Glutamate synthase, large chain (EC 1.4.1.13)
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -265
score = 5.47006
sequence = TGCCTAAAAATAAGGCA

Site:
position = -243
score = 4.86041
sequence = TGCGTAAAATTTGTGCA

Gene: Saro_1109: Glutamate synthase, large chain (EC 1.4.1.13)
*
Sphingopyxis alaskensis RB2256

Site:
position = -229
score = 4.61141
sequence = TGCTGCTTTTTTAGGCA

Gene: Sala_0148: Glutamate synthase, large chain (EC 1.4.1.13)
*
Sphingobium japonicum UT26S

Site:
position = -199
score = 4.06513
sequence = TGCCCGGAATCCGGGCA

Site:
position = -230
score = 5.65598
sequence = TGCCTAAAAAATGGGCA

Gene: SJA_C1-19360: Glutamate synthase, large chain (EC 1.4.1.13)
*
Sphingomonas wittichii RW1

Site:
position = -145
score = 5.36085
sequence = TGCCCATTTTTCAGGCA

Gene: Swit_4832: Glutamate synthase, large chain (EC 1.4.1.13)
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO0492: Glutamate synthase, large chain (EC 1.4.1.13)
Glutamate synthase, large chain (EC 1.4.1.13)
glnA
 
Erythrobacter litoralis HTCC2594

Gene: ELI_01660: Glutamine synthetase type I (EC 6.3.1.2)
 
Erythrobacter sp. NAP1

Gene: NAP1_00825: Glutamine synthetase type I (EC 6.3.1.2)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1108: Glutamine synthetase type I (EC 6.3.1.2)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_0149: Glutamine synthetase type I (EC 6.3.1.2)
 
Sphingobium japonicum UT26S

Gene: SJA_C1-19370: Glutamine synthetase type I (EC 6.3.1.2)
 
Sphingomonas wittichii RW1

Gene: Swit_4831: Glutamine synthetase type I (EC 6.3.1.2)
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO0493: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
 
CRON 2.
glnK
*
Erythrobacter litoralis HTCC2594

Site:
position = -134
score = 4.82405
sequence = TGCGTATTCTTTGGGCA

Site:
position = -152
score = 4.67588
sequence = TGACTAAAAATTAGGCC

Gene: ELI_13865: Nitrogen regulatory protein P-II
*
Erythrobacter sp. NAP1

Site:
position = -164
score = 4.63952
sequence = TGCTCAAAAAATAAACA

Site:
position = -145
score = 4.20443
sequence = TGATTAAACCTTAGGCA

Gene: NAP1_12238: Nitrogen regulatory protein P-II
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -182
score = 5.75215
sequence = TGCTTAAAATTTAGGCA

Site:
position = -207
score = 3.65002
sequence = TGCCCGGAAACGAAGCA

Gene: Saro_0693: Nitrogen regulatory protein P-II
*
Sphingopyxis alaskensis RB2256

Site:
position = -163
score = 5.83403
sequence = TGCCCAAAAATTAGGCA

Gene: Sala_2326: Nitrogen regulatory protein P-II
*
Sphingobium japonicum UT26S

Site:
position = -121
score = 4.34492
sequence = TGCCCATTTTTTCAGCG

Site:
position = -150
score = 5.57124
sequence = TGCCTAATTTTTGAGCA

Gene: SJA_C1-01910: Nitrogen regulatory protein P-II
*
Sphingomonas wittichii RW1

Site:
position = -159
score = 5.36085
sequence = TGCCTAAAAAACGGGCA

Site:
position = -141
score = 3.98131
sequence = GGCTCAACTTTTAGACA

Gene: Swit_1918: Nitrogen regulatory protein P-II
 
Zymomonas mobilis subsp. mobilis ZM4
Nitrogen regulatory protein P-II
amtB
 
Erythrobacter litoralis HTCC2594

Gene: ELI_13870: Ammonium transporter
 
Erythrobacter sp. NAP1

Gene: NAP1_12233: Ammonium transporter
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_0694: Ammonium transporter
 
Sphingopyxis alaskensis RB2256

Gene: Sala_2327: Ammonium transporter
 
Sphingobium japonicum UT26S

Gene: SJA_C1-01900: Ammonium transporter
 
Sphingomonas wittichii RW1

Gene: Swit_1917: Ammonium transporter
 
Zymomonas mobilis subsp. mobilis ZM4
Ammonium transporter
 
CRON 3.
nifR3
*
Erythrobacter litoralis HTCC2594

Site:
position = -31
score = 5.9175
sequence = TGCCCAAATTTTAGGCA

Gene: ELI_06285: Nitrogen assimilation transcriptional regulator NtrX, Fis family
*
Erythrobacter sp. NAP1

Site:
position = -32
score = 5.83403
sequence = TGCCCAATATTTAGGCA

Gene: NAP1_05550: Nitrogen assimilation transcriptional regulator NtrX, Fis family
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -28
score = 5.45829
sequence = TGCCTGTTTTTTAGGCA

Gene: Saro_1926: Nitrogen assimilation transcriptional regulator NtrX, Fis family
*
Sphingopyxis alaskensis RB2256

Site:
position = -38
score = 5.6547
sequence = TGCTCAAAATTTAGGCA

Gene: Sala_1277: Nitrogen assimilation transcriptional regulator NtrX, Fis family
*
Sphingobium japonicum UT26S

Site:
position = -28
score = 5.45829
sequence = TGCCTGTTTTTTAGGCA

Gene: SJA_C1-16750: Nitrogen assimilation transcriptional regulator NtrX, Fis family
*
Sphingomonas wittichii RW1

Site:
position = -27
score = 4.87421
sequence = TGCCGCTTTTTTAGGCA

Gene: Swit_0245: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO1127: Nitrogen assimilation transcriptional regulator NtrX, Fis family
Nitrogen assimilation transcriptional regulator NtrX, Fis family
ntrB
 
Erythrobacter litoralis HTCC2594

Gene: ELI_06280: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Erythrobacter sp. NAP1

Gene: NAP1_05545: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1927: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1276: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Sphingobium japonicum UT26S

Gene: SJA_C1-16740: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Sphingomonas wittichii RW1

Gene: Swit_0246: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Zymomonas mobilis subsp. mobilis ZM4
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Erythrobacter litoralis HTCC2594

Gene: ELI_06275: Nitrogen regulation protein NR(I), Fis family
 
Erythrobacter sp. NAP1

Gene: NAP1_05540: Nitrogen regulation protein NR(I), Fis family
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1928: Nitrogen regulation protein NR(I), Fis family
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1275: Nitrogen regulation protein NR(I), Fis family
 
Sphingobium japonicum UT26S

Gene: SJA_C1-16730: Nitrogen regulation protein NR(I), Fis family
 
Sphingomonas wittichii RW1

Gene: Swit_0247: Nitrogen regulation protein NR(I), Fis family
 
Zymomonas mobilis subsp. mobilis ZM4
Nitrogen regulation protein NR(I), Fis family
ntrY
 
Erythrobacter litoralis HTCC2594

Gene: ELI_06270: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Erythrobacter sp. NAP1

Gene: NAP1_05535: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1929: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1274: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Sphingobium japonicum UT26S

Gene: SJA_C1-16720: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Sphingomonas wittichii RW1

Gene: Swit_0249: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO1125: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
ntrXY
 
Erythrobacter litoralis HTCC2594

Gene: ELI_06265: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Erythrobacter sp. NAP1

Gene: NAP1_05530: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1930: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1273: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Sphingobium japonicum UT26S

Gene: SJA_C1-16710: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Sphingomonas wittichii RW1

Gene: Swit_0250: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO1124: Nitrogen assimilation transcriptional regulator NtrX, Fis family
Nitrogen assimilation transcriptional regulator NtrX, Fis family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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