Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Rhodobacterales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 92 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 12 4
Paracoccus denitrificans PD1222 10 4
Jannaschia sp. CCS1 33 9
Rhodobacterales bacterium HTCC2654 25 6
Oceanicola granulosus HTCC2516 19 4
Loktanella vestfoldensis SKA53 22 5
Oceanicola batsensis HTCC2597 21 4
Roseovarius nubinhibens ISM 9 3
Roseovarius sp. 217 18 5
Sulfitobacter sp. EE-36 24 7
Silicibacter TM1040 19 5
Silicibacter pomeroyi DSS-3 9 3
Roseobacter sp. MED193 32 8
Hyphomonas neptunium ATCC 15444 7 2
Oceanicaulis alexandrii HTCC2633
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glnB
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -126
score = 4.66863
sequence = TGCACAAAAATCGGGCG

Gene: RSP_0146: Nitrogen regulatory protein P-II
*
Paracoccus denitrificans PD1222

Site:
position = -148
score = 4.38469
sequence = CGCACATAATTCAGGCA

Site:
position = -128
score = 4.86677
sequence = TGCATAATATTCGGGCA

Gene: Pden_4461: Nitrogen regulatory protein P-II
*
Jannaschia sp. CCS1

Site:
position = -150
score = 4.37442
sequence = TGATCATTTTTTAGGCG

Gene: Jann_1516: Nitrogen regulatory protein P-II
*
Rhodobacterales bacterium HTCC2654

Site:
position = -127
score = 5.00341
sequence = TGCATAAATATTGTGCG

Gene: RB2654_02324: Nitrogen regulatory protein P-II
*
Oceanicola granulosus HTCC2516

Site:
position = -148
score = 4.40232
sequence = TGCCCAATCTTTGTGCC

Gene: OG2516_02329: Nitrogen regulatory protein P-II
*
Loktanella vestfoldensis SKA53

Site:
position = -146
score = 3.98588
sequence = AGCATGTTATTTGTGCA

Gene: SKA53_05805: Nitrogen regulatory protein P-II
 
Oceanicola batsensis HTCC2597

Gene: OB2597_03834: Nitrogen regulatory protein P-II
*
Roseovarius nubinhibens ISM

Site:
position = -161
score = 4.70298
sequence = TGCCCAAATTTCGGGCG

Site:
position = -141
score = 4.95552
sequence = TGCCTAAATAATGTGCA

Gene: ISM_05410: Nitrogen regulatory protein P-II
*
Roseovarius sp. 217

Site:
position = -128
score = 4.82994
sequence = CGCCCATTATTTAGGCA

Gene: ROS217_18110: Nitrogen regulatory protein P-II
*
Sulfitobacter sp. EE-36

Site:
position = -158
score = 3.93182
sequence = TGCACAGATTTTAATCG

Gene: EE36_12708: Nitrogen regulatory protein P-II
*
Silicibacter TM1040

Site:
position = -146
score = 4.33338
sequence = TGCCTATTTTTTAACCA

Gene: TM1040_1023: Nitrogen regulatory protein P-II
*
Silicibacter pomeroyi DSS-3

Site:
position = -144
score = 4.76677
sequence = TGCACAATCCTTGTGCA

Site:
position = -105
score = 3.88794
sequence = CGCCCAAAATTGCTGCA

Gene: SPO2294: Nitrogen regulatory protein P-II
*
Roseobacter sp. MED193

Site:
position = -145
score = 4.21858
sequence = CGCCTATTTTTAATGCA

Site:
position = -125
score = 4.36875
sequence = TGCCTACTTATTAATCA

Gene: MED193_05036: Nitrogen regulatory protein P-II
*
Hyphomonas neptunium ATCC 15444

Site:
position = -145
score = 4.47154
sequence = CGCCCAATCTTTAATCA

Site:
position = -124
score = 4.05273
sequence = TGCACAATCTTTAATCT

Gene: HNE_2083: Nitrogen regulatory protein P-II
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_03136: Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II
glnA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0147: Glutamine synthetase type I (EC 6.3.1.2)
 
Paracoccus denitrificans PD1222

Gene: Pden_4462: Glutamine synthetase type I (EC 6.3.1.2)
 
Jannaschia sp. CCS1

Gene: Jann_1515: Glutamine synthetase type I (EC 6.3.1.2)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_02319: Glutamine synthetase type I (EC 6.3.1.2)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_02324: Glutamine synthetase type I (EC 6.3.1.2)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_05810: Glutamine synthetase type I (EC 6.3.1.2)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_03839: Glutamine synthetase type I (EC 6.3.1.2)
 
Roseovarius nubinhibens ISM

Gene: ISM_05405: Glutamine synthetase type I (EC 6.3.1.2)
 2
Roseovarius sp. 217

Gene: ROS217_18105: Glutamine synthetase type I (EC 6.3.1.2)

Gene: ROS217_18092: Glutamine synthetase type I (EC 6.3.1.2)
 
Sulfitobacter sp. EE-36

Gene: EE36_12698: Glutamine synthetase type I (EC 6.3.1.2)
 
Silicibacter TM1040

Gene: TM1040_1022: Glutamine synthetase type I (EC 6.3.1.2)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2295: Glutamine synthetase type I (EC 6.3.1.2)
 
Roseobacter sp. MED193

Gene: MED193_05041: Glutamine synthetase type I (EC 6.3.1.2)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2084: Glutamine synthetase type I (EC 6.3.1.2)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_03141: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
 
CRON 2.
nifR3
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -108
score = 4.77738
sequence = CGCCCAATAAATGTGCA

Site:
position = -18
score = 4.37723
sequence = CGCACAAGGAATAGGCA

Gene: RSP_2836: Predicted oxidoreductase, FAD binding
*
Paracoccus denitrificans PD1222

Site:
position = -121
score = 4.31738
sequence = TGCCGACTATTTAGGCA

Gene: Pden_4131: Predicted oxidoreductase, FAD binding
*
Jannaschia sp. CCS1

Site:
position = -54
score = 5.12997
sequence = TGCTTAATTATTGTGCA

Gene: Jann_2236: Predicted oxidoreductase, FAD binding
*
Rhodobacterales bacterium HTCC2654

Site:
position = -107
score = 4.58462
sequence = TGCACAAATAACAGGCA

Site:
position = -17
score = 4.53169
sequence = CGCACAAGGATTAAGCA

Gene: RB2654_03209: Predicted oxidoreductase, FAD binding
*
Oceanicola granulosus HTCC2516

Site:
position = -110
score = 4.40469
sequence = CGCACAAAAAACAGGCA

Site:
position = -18
score = 4.7268
sequence = CGCACAATGTTTGAGCA

Gene: OG2516_04471: Predicted oxidoreductase, FAD binding
*
Loktanella vestfoldensis SKA53

Site:
position = -109
score = 4.98242
sequence = TGACTAATTTTTAGGCA

Gene: SKA53_04878: Predicted oxidoreductase, FAD binding
*
Oceanicola batsensis HTCC2597

Site:
position = -16
score = 4.81932
sequence = TGCACAAGGTTTAGGCA

Site:
position = -108
score = 4.63409
sequence = TGTTCAAAATTTAGGCA

Gene: OB2597_03097: Predicted oxidoreductase, FAD binding
*
Roseovarius nubinhibens ISM

Site:
position = -18
score = 4.71162
sequence = TGCACAAGGATTAAGCA

Site:
position = -108
score = 5.08998
sequence = TGCTTAAATTTTGTGCA

Gene: ISM_16645: Predicted oxidoreductase, FAD binding
*
Roseovarius sp. 217

Site:
position = -113
score = 4.95037
sequence = CGCCTAAAAATTAGGCG

Site:
position = -21
score = 4.83932
sequence = TGCACAAGGATTAGGCA

Gene: ROS217_20467: Predicted oxidoreductase, FAD binding
*
Sulfitobacter sp. EE-36

Site:
position = -111
score = 5.29023
sequence = TGCCTAAATTTTAGGCA

Site:
position = -18
score = 4.53169
sequence = TGCACAAGGATTAAGCG

Gene: EE36_14997: Predicted oxidoreductase, FAD binding
*
Silicibacter TM1040

Site:
position = -111
score = 4.57256
sequence = TGATTAAAAAATAGGCA

Site:
position = -18
score = 4.72982
sequence = TGCATAAGGATTAAGCA

Gene: TM1040_1363: Predicted oxidoreductase, FAD binding
*
Silicibacter pomeroyi DSS-3

Site:
position = -112
score = 4.67479
sequence = CGATTAAAAATTAGGCA

Site:
position = -20
score = 4.83932
sequence = TGCACAAGGATTAGGCA

Gene: SPO2089: Predicted oxidoreductase, FAD binding
*
Roseobacter sp. MED193

Site:
position = -72
score = 4.65939
sequence = CGCACAAGGATTAGGCA

Site:
position = -165
score = 5.16253
sequence = TGCTTAAAATTTAGGCA

Gene: MED193_04621: Predicted oxidoreductase, FAD binding
*
Hyphomonas neptunium ATCC 15444

Site:
position = -10
score = 4.52408
sequence = TGCCCATGATTTGTGCG

Gene: HNE_2013: Predicted oxidoreductase, FAD binding
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_02486: Predicted oxidoreductase, FAD binding
Predicted oxidoreductase, FAD binding
ntrB
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2837: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Paracoccus denitrificans PD1222

Gene: Pden_4130: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Jannaschia sp. CCS1

Gene: Jann_2237: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_03214: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_04466: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_04873: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_03102: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Roseovarius nubinhibens ISM

Gene: ISM_16640: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Roseovarius sp. 217

Gene: ROS217_20462: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Sulfitobacter sp. EE-36

Gene: EE36_15002: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Silicibacter TM1040

Gene: TM1040_1362: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2088: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Roseobacter sp. MED193

Gene: MED193_04616: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2012: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_02481: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2838: Nitrogen regulation protein NR(I), Fis family
 
Paracoccus denitrificans PD1222

Gene: Pden_4129: Nitrogen regulation protein NR(I), Fis family
 
Jannaschia sp. CCS1

Gene: Jann_2238: Nitrogen regulation protein NR(I), Fis family
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_03219: Nitrogen regulation protein NR(I), Fis family
 
Oceanicola granulosus HTCC2516

Gene: OG2516_04461: Nitrogen regulation protein NR(I), Fis family
 
Loktanella vestfoldensis SKA53

Gene: SKA53_04868: Nitrogen regulation protein NR(I), Fis family
 
Oceanicola batsensis HTCC2597

Gene: OB2597_03107: Nitrogen regulation protein NR(I), Fis family
 
Roseovarius nubinhibens ISM

Gene: ISM_16635: Nitrogen regulation protein NR(I), Fis family
 
Roseovarius sp. 217

Gene: ROS217_20457: Nitrogen regulation protein NR(I), Fis family
 
Sulfitobacter sp. EE-36

Gene: EE36_15007: Nitrogen regulation protein NR(I), Fis family
 
Silicibacter TM1040

Gene: TM1040_1361: Nitrogen regulation protein NR(I), Fis family
 
Silicibacter pomeroyi DSS-3

Gene: SPO2087: Nitrogen regulation protein NR(I), Fis family
 
Roseobacter sp. MED193

Gene: MED193_04611: Nitrogen regulation protein NR(I), Fis family
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2011: Nitrogen regulation protein NR(I), Fis family
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_02476: Nitrogen regulation protein NR(I), Fis family
Nitrogen regulation protein NR(I), Fis family
ntrY
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2839: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Paracoccus denitrificans PD1222

Gene: Pden_4128: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Jannaschia sp. CCS1

Gene: Jann_2239: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_03224: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_04456: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_04863: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_03112: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Roseovarius nubinhibens ISM

Gene: ISM_16630: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Roseovarius sp. 217

Gene: ROS217_20452: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Sulfitobacter sp. EE-36

Gene: EE36_15012: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Silicibacter TM1040

Gene: TM1040_1360: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2086: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Roseobacter sp. MED193

Gene: MED193_04606: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2010: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_02471: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
ntrX
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2840: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Paracoccus denitrificans PD1222

Gene: Pden_4127: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Jannaschia sp. CCS1

Gene: Jann_2240: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_03229: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Oceanicola granulosus HTCC2516

Gene: OG2516_04451: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Loktanella vestfoldensis SKA53

Gene: SKA53_04858: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Oceanicola batsensis HTCC2597

Gene: OB2597_03117: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Roseovarius nubinhibens ISM

Gene: ISM_16625: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Roseovarius sp. 217

Gene: ROS217_20447: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Sulfitobacter sp. EE-36

Gene: EE36_15017: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Silicibacter TM1040

Gene: TM1040_1359: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Silicibacter pomeroyi DSS-3

Gene: SPO2085: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Roseobacter sp. MED193

Gene: MED193_04601: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2009: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_02466: Nitrogen assimilation transcriptional regulator NtrX, Fis family
Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
CRON 3.
glnK
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -159
score = 4.48253
sequence = TGCATTAAAATTGGGCG

Gene: RSP_0889: Nitrogen regulatory protein P-II
 
Paracoccus denitrificans PD1222
*
Jannaschia sp. CCS1

Site:
position = -183
score = 4.40469
sequence = CGCACAAAAAACAGGCA

Gene: Jann_4056: Nitrogen regulatory protein P-II
*
Rhodobacterales bacterium HTCC2654

Site:
position = -136
score = 4.88987
sequence = TGACTAAAATTTGTGCA

Site:
position = -117
score = 3.871
sequence = TGCCCACAATGCGGGCA

Gene: RB2654_10683: Nitrogen regulatory protein P-II
 
Oceanicola granulosus HTCC2516

Gene: OG2516_12536: Nitrogen regulatory protein P-II
*
Loktanella vestfoldensis SKA53

Site:
position = -144
score = 4.67489
sequence = TGTACAATAATTGTGCA

Site:
position = -173
score = 4.67716
sequence = TGCCTATTAATCAGGCA

Gene: SKA53_13946: Nitrogen regulatory protein P-II
*
Oceanicola batsensis HTCC2597

Site:
position = -165
score = 4.42231
sequence = CGCACAAAAATTAATCG

Site:
position = -136
score = 5.23946
sequence = TGCCCAATAATTGTGCA

Gene: OB2597_10701: Nitrogen regulatory protein P-II
*
Roseovarius nubinhibens ISM

Site:
position = -175
score = 4.13386
sequence = CGCCCAATTTCTAGTCA

Site:
position = -146
score = 4.44778
sequence = TGCACAAAAAATAGTCG

Gene: ISM_08965: Nitrogen regulatory protein P-II
*
Roseovarius sp. 217

Site:
position = -133
score = 4.78962
sequence = TGCACATATTTTGAGCA

Site:
position = -162
score = 4.6915
sequence = TGCATAAATTTTAGGCT

Gene: ROS217_04115: Nitrogen regulatory protein P-II
*
Sulfitobacter sp. EE-36

Site:
position = -164
score = 5.11387
sequence = CGCCCAATAATTGGGCA

Site:
position = -135
score = 4.76118
sequence = CGCCCAATAATCAGGCA

Gene: EE36_08228: Nitrogen regulatory protein P-II
*
Silicibacter TM1040

Site:
position = -159
score = 4.34954
sequence = CGCCTAAATAACAAGCA

Gene: TM1040_2629: Nitrogen regulatory protein P-II
*
Silicibacter pomeroyi DSS-3

Site:
position = -133
score = 3.87069
sequence = TGTGCAAAAAATGTGCA

Gene: SPO3724: Nitrogen regulatory protein P-II
*
Roseobacter sp. MED193

Site:
position = -188
score = 4.28174
sequence = CGCCTAATTTCTGGGCG

Gene: MED193_15832: Nitrogen regulatory protein P-II
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrogen regulatory protein P-II
amtB
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_4057: Ammonium transporter
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_10688: Ammonium transporter
 
Oceanicola granulosus HTCC2516

Gene: OG2516_12541: Ammonium transporter
 
Loktanella vestfoldensis SKA53

Gene: SKA53_13951: Ammonium transporter
 
Oceanicola batsensis HTCC2597

Gene: OB2597_10696: Ammonium transporter
 
Roseovarius nubinhibens ISM

Gene: ISM_08960: Ammonium transporter
 
Roseovarius sp. 217

Gene: ROS217_04110: Ammonium transporter
 
Sulfitobacter sp. EE-36

Gene: EE36_08223: Ammonium transporter
 
Silicibacter TM1040

Gene: TM1040_2630: Ammonium transporter
 
Silicibacter pomeroyi DSS-3

Gene: SPO3723: Ammonium transporter
 
Roseobacter sp. MED193

Gene: MED193_15827: Ammonium transporter
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_3542: Ammonium transporter
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_04046: Ammonium transporter
Ammonium transporter
amtB2
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0888: Ammonium transporter
*
Paracoccus denitrificans PD1222

Site:
position = -130
score = 4.02554
sequence = TGCCCTTATTTCGGGCA

Gene: Pden_2032: Ammonium transporter
*
Jannaschia sp. CCS1

Site:
position = -122
score = 4.2791
sequence = CGCCCGAATAATAGGCG

Gene: Jann_2232: Ammonium transporter
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_03189: Ammonium transporter
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_14977: Ammonium transporter
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPO2093: Ammonium transporter
*
Roseobacter sp. MED193

Site:
position = -130
score = 4.20759
sequence = CGCCTATTCTTTAATCA

Gene: MED193_04641: Ammonium transporter
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Ammonium transporter
 
CRON 4.
nasT
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -140
score = 4.02247
sequence = CGCCCGAACCATGGGCA

Gene: Pden_4455: Nitrogen assimilation attenuator protein NasT
*
Jannaschia sp. CCS1

Site:
position = -56
score = 4.56885
sequence = TGCACAATACTTAATCA

Gene: Jann_3038: Nitrogen assimilation attenuator protein NasT
*
Rhodobacterales bacterium HTCC2654

Site:
position = -91
score = 4.6598
sequence = TGCCTAGAAATTAGGCA

Gene: RB2654_12499: Nitrogen assimilation attenuator protein NasT
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -111
score = 4.52957
sequence = CGCCCATTTTATGGGCA

Gene: ROS217_14776: Nitrogen assimilation attenuator protein NasT
*
Sulfitobacter sp. EE-36

Site:
position = -90
score = 3.91072
sequence = TGCTCACTGTTTGGGCT

Gene: EE36_07968: Nitrogen assimilation attenuator protein NasT
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
*
Roseobacter sp. MED193

Site:
position = -91
score = 4.61993
sequence = AGCCTAAAAATTGAGCA

Gene: MED193_14852: Nitrogen assimilation attenuator protein NasT
 2
Hyphomonas neptunium ATCC 15444

Gene: HNE_1618: Nitrogen assimilation attenuator protein NasT

Gene: HNE_2233: Nitrogen assimilation attenuator protein NasT
 
Oceanicaulis alexandrii HTCC2633
Nitrogen assimilation attenuator protein NasT
nrtA2
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4454: Nitrate ABC transporter, substrate-binding component
 
Jannaschia sp. CCS1

Gene: Jann_3039: Nitrate ABC transporter, substrate-binding component
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12494: Nitrate ABC transporter, substrate-binding component
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_14781: Nitrate ABC transporter, substrate-binding component
 
Sulfitobacter sp. EE-36

Gene: EE36_07973: Nitrate ABC transporter, substrate-binding component
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_14847: Nitrate ABC transporter, substrate-binding component
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2232: Nitrate ABC transporter, substrate-binding component
 
Oceanicaulis alexandrii HTCC2633
Nitrate ABC transporter, substrate-binding component
 
CRON 5.
gdhA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0398: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
Paracoccus denitrificans PD1222
*
Jannaschia sp. CCS1

Site:
position = -141
score = 4.36472
sequence = TGCCTGATATTTGCGCA

Gene: Jann_3440: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516

Gene: OG2516_06267: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_01906: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_00970: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
Roseovarius nubinhibens ISM

Gene: ISM_12965: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
Roseovarius sp. 217

Gene: ROS217_17127: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
*
Sulfitobacter sp. EE-36

Site:
position = -130
score = 4.58224
sequence = TGATTAAAATTTGTGCG

Gene: EE36_02983: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
*
Silicibacter TM1040

Site:
position = -112
score = 4.66308
sequence = TGCCAAAAAATTGTGCA

Gene: TM1040_2150: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
Silicibacter pomeroyi DSS-3

Gene: SPO1743: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 2
Roseobacter sp. MED193

Gene: MED193_08583: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)

Gene: MED193_14907: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
CRON 6.
urtA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0301: Urea ABC transporter, substrate-binding component
 
Paracoccus denitrificans PD1222

Gene: Pden_4017: Urea ABC transporter, substrate-binding component
 
Jannaschia sp. CCS1
*3
Rhodobacterales bacterium HTCC2654

Site:
position = -248
score = 4.53335
sequence = CGCACAATTATTAGGCT

Site:
position = -178
score = 4.04382
sequence = TGCTCAAAAGGTATGCA

Gene: RB2654_15836: Urea ABC transporter, substrate-binding component

Gene: RB2654_15841: Urea ABC transporter, substrate-binding component

Gene: RB2654_15846: Urea ABC transporter, substrate-binding component
*
Oceanicola granulosus HTCC2516

Site:
position = -319
score = 3.90011
sequence = CGCCCGATAATGGGGCG

Gene: OG2516_01039: Urea ABC transporter, substrate-binding component
*
Loktanella vestfoldensis SKA53

Site:
position = -280
score = 4.63894
sequence = AGCATAAAAATTGTGCA

Gene: SKA53_09869: Urea ABC transporter, substrate-binding component
*
Oceanicola batsensis HTCC2597

Site:
position = -321
score = 3.88125
sequence = TGCCTGTTTCTTGGGCT

Site:
position = -280
score = 4.16788
sequence = TGCCCAAAAACTGATCA

Gene: OB2597_15036: Urea ABC transporter, substrate-binding component
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_05404: Urea ABC transporter, substrate-binding component
*
Sulfitobacter sp. EE-36

Site:
position = -252
score = 3.89277
sequence = TGCCAAAAAATGAGGCG

Gene: EE36_10385: Urea ABC transporter, substrate-binding component
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPO1710: Urea ABC transporter, substrate-binding component
*
Roseobacter sp. MED193

Site:
position = -201
score = 4.17543
sequence = TGCGTAACTTTTGGGCA

Gene: MED193_07963: Urea ABC transporter, substrate-binding component
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urea ABC transporter, substrate-binding component
urtB
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0300: Urea ABC transporter, permease component 1
 
Paracoccus denitrificans PD1222

Gene: Pden_4018: Urea ABC transporter, permease component 1
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_15851: Urea ABC transporter, permease component 1
 
Oceanicola granulosus HTCC2516

Gene: OG2516_01034: Urea ABC transporter, permease component 1
 
Loktanella vestfoldensis SKA53

Gene: SKA53_09864: Urea ABC transporter, permease component 1
 
Oceanicola batsensis HTCC2597

Gene: OB2597_15041: Urea ABC transporter, permease component 1
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_05399: Urea ABC transporter, permease component 1
 
Sulfitobacter sp. EE-36

Gene: EE36_10390: Urea ABC transporter, permease component 1
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPO1709: Urea ABC transporter, permease component 1
 
Roseobacter sp. MED193

Gene: MED193_07958: Urea ABC transporter, permease component 1
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urea ABC transporter, permease component 1
urtB
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0299: Urea ABC transporter, permease component 2
 
Paracoccus denitrificans PD1222

Gene: Pden_4019: Urea ABC transporter, permease component 2
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_15856: Urea ABC transporter, permease component 2
 
Oceanicola granulosus HTCC2516

Gene: OG2516_01029: Urea ABC transporter, permease component 2
 
Loktanella vestfoldensis SKA53

Gene: SKA53_09859: Urea ABC transporter, permease component 2
 
Oceanicola batsensis HTCC2597

Gene: OB2597_15046: Urea ABC transporter, permease component 2
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_05394: Urea ABC transporter, permease component 2
 
Sulfitobacter sp. EE-36

Gene: EE36_10395: Urea ABC transporter, permease component 2
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPO1708: Urea ABC transporter, permease component 2
 
Roseobacter sp. MED193

Gene: MED193_07953: Urea ABC transporter, permease component 2
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urea ABC transporter, permease component 2
urtD
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0298: Urea ABC transporter, ATP-binding component 1
 
Paracoccus denitrificans PD1222

Gene: Pden_4020: Urea ABC transporter, ATP-binding component 1
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_15861: Urea ABC transporter, ATP-binding component 1
 
Oceanicola granulosus HTCC2516

Gene: OG2516_01024: Urea ABC transporter, ATP-binding component 1
 
Loktanella vestfoldensis SKA53

Gene: SKA53_09854: Urea ABC transporter, ATP-binding component 1
 
Oceanicola batsensis HTCC2597

Gene: OB2597_15051: Urea ABC transporter, ATP-binding component 1
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_05389: Urea ABC transporter, ATP-binding component 1
 
Sulfitobacter sp. EE-36

Gene: EE36_10400: Urea ABC transporter, ATP-binding component 1
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0447: Urea ABC transporter, ATP-binding component 1
 
Roseobacter sp. MED193

Gene: MED193_07948: Urea ABC transporter, ATP-binding component 1
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urea ABC transporter, ATP-binding component 1
urtE
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0297: Urea ABC transporter, ATP-binding component 1
 
Paracoccus denitrificans PD1222

Gene: Pden_4021: Urea ABC transporter, ATP-binding component 1
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_15866: Urea ABC transporter, ATP-binding component 1
 
Oceanicola granulosus HTCC2516

Gene: OG2516_01019: Urea ABC transporter, ATP-binding component 1
 
Loktanella vestfoldensis SKA53

Gene: SKA53_09849: Urea ABC transporter, ATP-binding component 1
 
Oceanicola batsensis HTCC2597

Gene: OB2597_15056: Urea ABC transporter, ATP-binding component 1
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_05384: Urea ABC transporter, ATP-binding component 1
 
Sulfitobacter sp. EE-36

Gene: EE36_10405: Urea ABC transporter, ATP-binding component 1
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPO1707: Urea ABC transporter, ATP-binding component 1
 
Roseobacter sp. MED193

Gene: MED193_07943: Urea ABC transporter, ATP-binding component 1
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urea ABC transporter, ATP-binding component 1
 
CRON 7.
nrtA
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
*
Jannaschia sp. CCS1

Site:
position = -269
score = 4.70298
sequence = TGCCCAAAATTCGGGCG

Gene: Jann_3040: Nitrate ABC transporter, substrate-binding component
*
Rhodobacterales bacterium HTCC2654

Site:
position = -260
score = 4.71673
sequence = CGCACAAGAATTAAGCA

Gene: RB2654_12489: Nitrate ABC transporter, substrate-binding component
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_14786: Nitrate ABC transporter, substrate-binding component
 
Sulfitobacter sp. EE-36

Gene: EE36_07978: Nitrate ABC transporter, substrate-binding component
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
*
Roseobacter sp. MED193

Site:
position = -232
score = 4.46167
sequence = TGCCCAAAAACTAGGCG

Gene: MED193_14842: Nitrate ABC transporter, substrate-binding component
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrate ABC transporter, substrate-binding component
nrtB
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
*
Jannaschia sp. CCS1

Site:
position = -138
score = 4.65001
sequence = CGCCCAAAAAATAGGCG

Gene: Jann_3041: Nitrate ABC transporter, permease component
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12484: Nitrate ABC transporter, permease component
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_14791: Nitrate ABC transporter, permease component
 
Sulfitobacter sp. EE-36

Gene: EE36_07983: Nitrate ABC transporter, permease component
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_14837: Nitrate ABC transporter, permease component
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrate ABC transporter, permease component
nrtC
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_3042: Nitrate ABC transporter, ATP-binding component
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12479: Nitrate ABC transporter, ATP-binding component
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_14796: Nitrate ABC transporter, ATP-binding component
 
Sulfitobacter sp. EE-36

Gene: EE36_07988: Nitrate ABC transporter, ATP-binding component
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_14832: Nitrate ABC transporter, ATP-binding component
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitrate ABC transporter, ATP-binding component
nasD
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4452: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Jannaschia sp. CCS1

Gene: Jann_3043: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12469: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_14801: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Sulfitobacter sp. EE-36

Gene: EE36_07993: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_14827: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2234: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Oceanicaulis alexandrii HTCC2633
Nitrite reductase, large subunit (EC 1.7.1.4)
nasE
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4451: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Jannaschia sp. CCS1

Gene: Jann_3044: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12464: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_14806: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Sulfitobacter sp. EE-36

Gene: EE36_07998: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_14822: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2235: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Oceanicaulis alexandrii HTCC2633
Nitrite reductase, small subunit (EC 1.7.1.4)
nasA
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_4449: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
 
Jannaschia sp. CCS1

Gene: Jann_3045: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12459: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_14811: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
 
Sulfitobacter sp. EE-36

Gene: EE36_08003: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_14817: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
COG0547
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_3046: Glycosyl transferase, family 3
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_14816: Glycosyl transferase, family 3
 
Sulfitobacter sp. EE-36

Gene: EE36_08008: Glycosyl transferase, family 3
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_14812: Glycosyl transferase, family 3
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Glycosyl transferase, family 3
cysG
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_3047: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_14821: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
 
Sulfitobacter sp. EE-36

Gene: EE36_08013: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_14807: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
hmp
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_12474: Nitric oxide dioxygenase
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Nitric oxide dioxygenase
 
CRON 8.
ureD
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -124
score = 4.19692
sequence = TGCCCGATCCTTGAGCG

Gene: RSP_0310: Urease accessory protein, UreD
 
Paracoccus denitrificans PD1222

Gene: Pden_1212: Urease accessory protein, UreD
*
Jannaschia sp. CCS1

Site:
position = -139
score = 4.22005
sequence = TGCCTGCGAATTAGGCA

Gene: Jann_1744: Urease accessory protein, UreD
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_09984: Urease accessory protein, UreD
*
Oceanicola granulosus HTCC2516

Site:
position = -66
score = 3.90011
sequence = CGCCCCATTATCGGGCG

Gene: OG2516_01044: Urease accessory protein, UreD
*
Loktanella vestfoldensis SKA53

Site:
position = -115
score = 4.91933
sequence = TGCCTGAATTTTAGGCA

Gene: SKA53_14866: Urease accessory protein, UreD
*
Oceanicola batsensis HTCC2597

Site:
position = -204
score = 4.42083
sequence = CGCCCGTATTTTGGGCA

Gene: OB2597_07075: Urease accessory protein, UreD
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -120
score = 3.87825
sequence = TGCGCTAAAAATAGGCA

Gene: ROS217_05379: Urease accessory protein, UreD
*
Sulfitobacter sp. EE-36

Site:
position = -93
score = 5.16432
sequence = TGCTCAAATATTAGGCA

Gene: EE36_08503: Urease accessory protein, UreD
*
Silicibacter TM1040

Site:
position = -142
score = 4.26493
sequence = CGCTTATTTTTTAATCA

Gene: TM1040_0388: Urease accessory protein, UreD
 
Silicibacter pomeroyi DSS-3

Gene: SPO1711: Urease accessory protein, UreD
*
Roseobacter sp. MED193

Site:
position = -83
score = 4.17543
sequence = TGCCCAAAAGTTACGCA

Gene: MED193_07968: Urease accessory protein, UreD
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urease accessory protein, UreD
ureA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0309: Urease, gamma subunit (EC 3.5.1.5)
 
Paracoccus denitrificans PD1222

Gene: Pden_1211: Urease, gamma subunit (EC 3.5.1.5)
 
Jannaschia sp. CCS1

Gene: Jann_1745: Urease, gamma subunit (EC 3.5.1.5)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_09979: Urease, gamma subunit (EC 3.5.1.5)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_01049: Urease, gamma subunit (EC 3.5.1.5)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_14871: Urease, gamma subunit (EC 3.5.1.5)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_07070: Urease, gamma subunit (EC 3.5.1.5)
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_05374: Urease, gamma subunit (EC 3.5.1.5)
 
Sulfitobacter sp. EE-36

Gene: EE36_08498: Urease, gamma subunit (EC 3.5.1.5)
 
Silicibacter TM1040

Gene: TM1040_0387: Urease, gamma subunit (EC 3.5.1.5)
 
Silicibacter pomeroyi DSS-3

Gene: SPO1712: Urease, gamma subunit (EC 3.5.1.5)
 
Roseobacter sp. MED193

Gene: MED193_07973: Urease, gamma subunit (EC 3.5.1.5)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urease, gamma subunit (EC 3.5.1.5)
ureB
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0308: Urease, beta subunit (EC 3.5.1.5)
 
Paracoccus denitrificans PD1222

Gene: Pden_1209: Urease, beta subunit (EC 3.5.1.5)
 
Jannaschia sp. CCS1

Gene: Jann_1747: Urease, beta subunit (EC 3.5.1.5)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_09969: Urease, beta subunit (EC 3.5.1.5)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_01054: Urease, beta subunit (EC 3.5.1.5)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_14876: Urease, beta subunit (EC 3.5.1.5)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_07060: Urease, beta subunit (EC 3.5.1.5)
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_05364: Urease, beta subunit (EC 3.5.1.5)
 
Sulfitobacter sp. EE-36

Gene: EE36_08488: Urease, beta subunit (EC 3.5.1.5)
 
Silicibacter TM1040

Gene: TM1040_0386: Urease, beta subunit (EC 3.5.1.5)
 
Silicibacter pomeroyi DSS-3

Gene: SPO1713: Urease, beta subunit (EC 3.5.1.5)
 
Roseobacter sp. MED193

Gene: MED193_07983: Urease, beta subunit (EC 3.5.1.5)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urease, beta subunit (EC 3.5.1.5)
Jann_1748
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_1748: protein of unknown function DUF1311
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
protein of unknown function DUF1311
Jann_1749
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_1749: Twin-arginine translocation pathway signal
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Twin-arginine translocation pathway signal
PF02627
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_1750: Putative alkylhydroperoxidase
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Putative alkylhydroperoxidase
Jann_1751
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_1751: Hypothetical protein
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Hypothetical protein
ureC
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_6111: Urease, alpha subunit (EC 3.5.1.5)
 
Paracoccus denitrificans PD1222

Gene: Pden_1208: Urease, alpha subunit (EC 3.5.1.5)
 
Jannaschia sp. CCS1

Gene: Jann_1752: Urease, alpha subunit (EC 3.5.1.5)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_09959: Urease, alpha subunit (EC 3.5.1.5)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_01059: Urease, alpha subunit (EC 3.5.1.5)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_14881: Urease, alpha subunit (EC 3.5.1.5)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_07050: Urease, alpha subunit (EC 3.5.1.5)
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_05359: Urease, alpha subunit (EC 3.5.1.5)
 
Sulfitobacter sp. EE-36

Gene: EE36_08483: Urease, alpha subunit (EC 3.5.1.5)
 
Silicibacter TM1040

Gene: TM1040_0385: Urease, alpha subunit (EC 3.5.1.5)
 
Silicibacter pomeroyi DSS-3

Gene: SPO1714: Urease, alpha subunit (EC 3.5.1.5)
 
Roseobacter sp. MED193

Gene: MED193_07988: Urease, alpha subunit (EC 3.5.1.5)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urease, alpha subunit (EC 3.5.1.5)
Jann_1753
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_1753: Conserved hypothetical protein
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_09944: Conserved hypothetical protein
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_0384: Conserved hypothetical protein
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Conserved hypothetical protein
ureE
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0304: Urease accessory protein, UreE
 
Paracoccus denitrificans PD1222

Gene: Pden_1207: Urease accessory protein, UreE
 
Jannaschia sp. CCS1

Gene: Jann_1754: Urease accessory protein, UreE
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_09939: Urease accessory protein, UreE
 
Oceanicola granulosus HTCC2516

Gene: OG2516_01064: Urease accessory protein, UreE
 
Loktanella vestfoldensis SKA53

Gene: SKA53_14891: Urease accessory protein, UreE
 
Oceanicola batsensis HTCC2597

Gene: OB2597_07040: Urease accessory protein, UreE
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_05354: Urease accessory protein, UreE
 
Sulfitobacter sp. EE-36

Gene: EE36_08478: Urease accessory protein, UreE
 
Silicibacter TM1040

Gene: TM1040_0382: Urease accessory protein, UreE
 
Silicibacter pomeroyi DSS-3

Gene: SPO1715: Urease accessory protein, UreE
 
Roseobacter sp. MED193

Gene: MED193_07993: Urease accessory protein, UreE
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urease accessory protein, UreE
ureF
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0303: Urease accessory protein, UreF
 
Paracoccus denitrificans PD1222

Gene: Pden_1206: Urease accessory protein, UreF
 
Jannaschia sp. CCS1

Gene: Jann_1755: Urease accessory protein, UreF
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_09934: Urease accessory protein, UreF
 
Oceanicola granulosus HTCC2516

Gene: OG2516_01069: Urease accessory protein, UreF
 
Loktanella vestfoldensis SKA53

Gene: SKA53_14896: Urease accessory protein, UreF
 
Oceanicola batsensis HTCC2597

Gene: OB2597_07035: Urease accessory protein, UreF
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_05349: Urease accessory protein, UreF
 
Sulfitobacter sp. EE-36

Gene: EE36_08473: Urease accessory protein, UreF
 
Silicibacter TM1040

Gene: TM1040_0381: Urease accessory protein, UreF
 
Silicibacter pomeroyi DSS-3

Gene: SPO1716: Urease accessory protein, UreF
 
Roseobacter sp. MED193

Gene: MED193_07998: Urease accessory protein, UreF
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urease accessory protein, UreF
ureG
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0302: Urease accessory protein, UreG
 
Paracoccus denitrificans PD1222

Gene: Pden_1205: Urease accessory protein, UreG
 
Jannaschia sp. CCS1

Gene: Jann_1756: Urease accessory protein, UreG
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_09929: Urease accessory protein, UreG
 
Oceanicola granulosus HTCC2516

Gene: OG2516_01074: Urease accessory protein, UreG
 
Loktanella vestfoldensis SKA53

Gene: SKA53_14901: Urease accessory protein, UreG
 
Oceanicola batsensis HTCC2597

Gene: OB2597_07030: Urease accessory protein, UreG
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_05344: Urease accessory protein, UreG
 
Sulfitobacter sp. EE-36

Gene: EE36_08468: Urease accessory protein, UreG
 
Silicibacter TM1040

Gene: TM1040_0380: Urease accessory protein, UreG
 
Silicibacter pomeroyi DSS-3

Gene: SPO1717: Urease accessory protein, UreG
 
Roseobacter sp. MED193

Gene: MED193_08003: Urease accessory protein, UreG
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Urease accessory protein, UreG
TM1040_0383
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53

Gene: SKA53_14886: Conserved hypothetical protein
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_0383: Conserved hypothetical protein
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Conserved hypothetical protein
OB2597_07055
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_07055: Hypothetical protein
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Hypothetical protein
OB2597_07045
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_09924: Conserved hypothetical protein
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_07045: Conserved hypothetical protein
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Conserved hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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