Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 86 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Sinorhizobium meliloti 1021 8 4
Rhizobium sp. NGR234 21 7
Rhizobium leguminosarum bv. viciae 3841 17 5
Rhizobium etli CFN 42 21 6
Agrobacterium tumefaciens str. C58 (Cereon) 10 3
Mesorhizobium sp. BNC1 6 2
Mesorhizobium loti MAFF303099 4 2
Brucella melitensis 16M 6 3
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009 27 6
Bradyrhizobium japonicum USDA 110 24 6
Bradyrhizobium sp. BTAi1 30 8
Nitrobacter winogradskyi Nb-255 5 2
Azorhizobium caulinodans ORS 571 27 6
Xanthobacter autotrophicus Py2 42 8
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrtA
 
Sinorhizobium meliloti 1021

Gene: SMa0585: Nitrate ABC transporter, substrate-binding component
*
Rhizobium sp. NGR234

Site:
position = -297
score = 4.43741
sequence = CGCACAAAATTTCATCA

Site:
position = -269
score = 3.81744
sequence = TGCCTATTTCTGAGGCA

Gene: NGR_b15160: Nitrate ABC transporter, substrate-binding component
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -227
score = 4.24955
sequence = AGCCTAAGAAATAGGCA

Gene: pRL100344: Nitrate ABC transporter, substrate-binding component
*
Rhizobium etli CFN 42

Site:
position = -289
score = 4.05001
sequence = CGCACAAATGATAATCA

Site:
position = -261
score = 4.58483
sequence = TGCATATTAAATAATCA

Gene: RHE_PF00452: Nitrate ABC transporter, substrate-binding component
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -300
score = 4.62869
sequence = TGATTAAAATTTAATCG

Gene: Atu3905: Nitrate ABC transporter, substrate-binding component
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mlr2858: Nitrate ABC transporter, substrate-binding component
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110

Gene: blr2803: Nitrate ABC transporter, substrate-binding component
*
Bradyrhizobium sp. BTAi1

Site:
position = -314
score = 4.41525
sequence = CGCCCACTTTTTGTGCA

Gene: BBta_2817: Nitrate ABC transporter, substrate-binding component
 
Nitrobacter winogradskyi Nb-255
*
Azorhizobium caulinodans ORS 571

Site:
position = -242
score = 4.62204
sequence = TGCTCATTTTTTGATCT

Gene: AZC_0686: Nitrate ABC transporter, substrate-binding component
*2
Xanthobacter autotrophicus Py2

Site:
position = -312
score = 3.83542
sequence = CGCACAATTTGAATGCA

Site:
position = -252
score = 4.40539
sequence = CGCCCAAATTTTCATCA

Gene: Xaut_2504: Nitrate ABC transporter, substrate-binding component

Site:
position = -292
score = 3.91311
sequence = TGCCCAATCCATAAGCT

Site:
position = -270
score = 4.63214
sequence = TGCATATTTTTTGTGCG

Gene: Xaut_1084: Nitrate ABC transporter, substrate-binding component
Nitrate ABC transporter, substrate-binding component
nrtB
 
Sinorhizobium meliloti 1021

Gene: SMa0583: Nitrate ABC transporter, permease component
 
Rhizobium sp. NGR234

Gene: NGR_b15170: Nitrate ABC transporter, permease component
 
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL100345: Nitrate ABC transporter, permease component
 
Rhizobium etli CFN 42

Gene: RHE_PF00453: Nitrate ABC transporter, permease component
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3904: Nitrate ABC transporter, permease component
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mlr2860: Nitrate ABC transporter, permease component
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110

Gene: blr2804: Nitrate ABC transporter, permease component
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2819: Nitrate ABC transporter, permease component
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0685: Nitrate ABC transporter, permease component
 2
Xanthobacter autotrophicus Py2

Gene: Xaut_2503: Nitrate ABC transporter, permease component

Gene: Xaut_1083: Nitrate ABC transporter, permease component
Nitrate ABC transporter, permease component
nrtC
 
Sinorhizobium meliloti 1021

Gene: SMa0581: Nitrate ABC transporter, ATP-binding component
*2
Rhizobium sp. NGR234

Gene: NGR_b15180: Nitrate ABC transporter, ATP-binding component

Site:
position = -338
score = 3.84647
sequence = CGCTGCTTTTTTAAGCA

Site:
position = -303
score = 4.32105
sequence = CGCACAATTATTGACCA

Gene: NGR_b11400: Nitrate ABC transporter, ATP-binding component
 
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL100346: Nitrate ABC transporter, ATP-binding component
 
Rhizobium etli CFN 42

Gene: RHE_PF00454: Nitrate ABC transporter, ATP-binding component
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3903: Nitrate ABC transporter, ATP-binding component
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mlr2861: Nitrate ABC transporter, ATP-binding component
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110

Gene: blr2805: Nitrate ABC transporter, ATP-binding component
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2820: Nitrate ABC transporter, ATP-binding component
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0684: Nitrate ABC transporter, ATP-binding component
 2
Xanthobacter autotrophicus Py2

Gene: Xaut_2502: Nitrate ABC transporter, ATP-binding component

Gene: Xaut_1082: Nitrate ABC transporter, ATP-binding component
Nitrate ABC transporter, ATP-binding component
Xaut_1081
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1081: Hypothetical protein
Hypothetical protein
nasD
 
Sinorhizobium meliloti 1021

Gene: SMb20984: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Rhizobium sp. NGR234

Gene: NGR_b11390: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL1991: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Rhizobium etli CFN 42

Gene: RHE_CH01782: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3902: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Mesorhizobium sp. BNC1

Gene: Meso_1451: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Mesorhizobium loti MAFF303099

Gene: mlr2862: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_0719: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1080: Nitrite reductase, large subunit (EC 1.7.1.4)
Nitrite reductase, large subunit (EC 1.7.1.4)
nasE
 
Sinorhizobium meliloti 1021

Gene: SMb20985: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Rhizobium sp. NGR234

Gene: NGR_b11380: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL1990: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Rhizobium etli CFN 42

Gene: RHE_CH01781: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3901: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Mesorhizobium sp. BNC1

Gene: Meso_1452: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Mesorhizobium loti MAFF303099

Gene: mlr2863: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_0720: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1079: Nitrite reductase, small subunit (EC 1.7.1.4)
Nitrite reductase, small subunit (EC 1.7.1.4)
nasA
 
Sinorhizobium meliloti 1021

Gene: SMb20986: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Rhizobium sp. NGR234

Gene: NGR_b11370: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL1989: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Rhizobium etli CFN 42

Gene: RHE_CH01780: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3900: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Mesorhizobium sp. BNC1

Gene: Meso_1453: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Mesorhizobium loti MAFF303099

Gene: mlr2864: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110

Gene: blr2809: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2823: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0679: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 2
Xanthobacter autotrophicus Py2

Gene: Xaut_1078: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)

Gene: Xaut_2497: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
cysG
 
Sinorhizobium meliloti 1021

Gene: SMb20987: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
 
Rhizobium sp. NGR234

Gene: NGR_b11360: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3899: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1077: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
hmp
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3709: Nitric oxide dioxygenase
 
Bradyrhizobium japonicum USDA 110

Gene: blr2807: Nitric oxide dioxygenase
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2821: Nitric oxide dioxygenase
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0683: Nitric oxide dioxygenase
 
Xanthobacter autotrophicus Py2

Gene: Xaut_2501: Nitric oxide dioxygenase
Nitric oxide dioxygenase
nasB
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110

Gene: blr2808: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2822: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0682: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_2500: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
nirA
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3710: Ferredoxin--nitrite reductase (EC 1.7.7.1)
*
Bradyrhizobium japonicum USDA 110

Site:
position = -202
score = 3.98659
sequence = CGTCTAAATTTTGGGCT

Gene: bll4571: Ferredoxin--nitrite reductase (EC 1.7.7.1)
*
Bradyrhizobium sp. BTAi1

Site:
position = -278
score = 4.05041
sequence = CGTACAAATTTTAGGCG

Gene: BBta_4137: Ferredoxin--nitrite reductase (EC 1.7.7.1)
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0681: Ferredoxin--nitrite reductase (EC 1.7.7.1)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_2499: Ferredoxin--nitrite reductase (EC 1.7.7.1)
Ferredoxin--nitrite reductase (EC 1.7.7.1)
nasB2
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3711: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Bradyrhizobium japonicum USDA 110

Gene: bll4570: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_4136: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0680: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_2498: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
narK
*
Sinorhizobium meliloti 1021

Site:
position = -306
score = 4.48546
sequence = TGCACGATAATTGGGCA

Site:
position = -276
score = 3.8585
sequence = GGCCCAATATTTGACCA

Gene: SMb20436: Nitrate/nitrite antiporter
*
Rhizobium sp. NGR234

Site:
position = -299
score = 4.1415
sequence = TGCCCATCAAATGGGCA

Site:
position = -269
score = 3.87716
sequence = AGGCTAATATTTGGTCA

Gene: NGR_b17280: Nitrate/nitrite antiporter
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL1992: Nitrate/nitrite antiporter
*
Rhizobium etli CFN 42

Site:
position = -207
score = 3.77385
sequence = CGAACAAATTCTCAGCA

Gene: RHE_CH01783: Nitrate/nitrite antiporter
 
Agrobacterium tumefaciens str. C58 (Cereon)
*
Mesorhizobium sp. BNC1

Site:
position = -325
score = 4.17811
sequence = TGCCTAAGAAATAAACA

Gene: Meso_1450: Nitrate/nitrite antiporter
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
*
Bradyrhizobium japonicum USDA 110

Site:
position = -292
score = 3.9186
sequence = AGCTCAATCCTTGTGCG

Gene: blr2806: Nitrate/nitrite antiporter
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Nitrate/nitrite antiporter
 
CRON 2.
glnK
*
Sinorhizobium meliloti 1021

Site:
position = -214
score = 4.86889
sequence = TGCTTATATTTTAATCA

Gene: SMc03806: Nitrogen regulatory protein P-II
*
Rhizobium sp. NGR234

Site:
position = -218
score = 3.86047
sequence = TGCCTGTTTTTTAATCT

Gene: NGR_c31500: Nitrogen regulatory protein P-II
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -201
score = 3.80883
sequence = TGCGCGTTATTTGTGCG

Gene: RL4565: Nitrogen regulatory protein P-II
*
Rhizobium etli CFN 42

Site:
position = -200
score = 4.41525
sequence = TGCGCATTATTTGTGCG

Gene: RHE_CH03974: Nitrogen regulatory protein P-II
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2757: Nitrogen regulatory protein P-II
*
Mesorhizobium sp. BNC1

Site:
position = -203
score = 4.67744
sequence = TGCACATTTTTTGTTCA

Gene: Meso_3237: Nitrogen regulatory protein P-II
*
Mesorhizobium loti MAFF303099

Site:
position = -202
score = 5.20856
sequence = TGCATAATTTTTGAGCA

Gene: mll4247: Nitrogen regulatory protein P-II
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
*2
Rhodopseudomonas palustris CGA009

Site:
position = -240
score = 4.38404
sequence = TGCCTGATTATTGATCA

Gene: RPA0274: Nitrogen regulatory protein P-II

Gene: RPA0272: Nitrogen regulatory protein P-II
*2
Bradyrhizobium japonicum USDA 110

Gene: blr0606: Nitrogen regulatory protein P-II

Site:
position = -180
score = 4.14701
sequence = TGCCCTCATTTTGAGCA

Gene: blr0612: Nitrogen regulatory protein P-II
*2
Bradyrhizobium sp. BTAi1

Site:
position = -335
score = 4.6571
sequence = TGCGCAATTTTTGCGCA

Gene: BBta_0293: Nitrogen regulatory protein P-II

Gene: BBta_0295: Nitrogen regulatory protein P-II
 
Nitrobacter winogradskyi Nb-255
*
Azorhizobium caulinodans ORS 571

Site:
position = -241
score = 3.95623
sequence = CGCCTATTTTTAAGGCA

Gene: AZC_4227: Nitrogen regulatory protein P-II
*
Xanthobacter autotrophicus Py2

Site:
position = -244
score = 4.71057
sequence = AGATCAATAATTAGGCA

Gene: Xaut_2209: Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II
amtB
 
Sinorhizobium meliloti 1021

Gene: SMc03807: Ammonium transporter
 
Rhizobium sp. NGR234

Gene: NGR_c31490: Ammonium transporter
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL4564: Ammonium transporter
 
Rhizobium etli CFN 42

Gene: RHE_CH03973: Ammonium transporter
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2758: Ammonium transporter
 
Mesorhizobium sp. BNC1

Gene: Meso_3236: Ammonium transporter
 
Mesorhizobium loti MAFF303099

Gene: mll4246: Ammonium transporter
*
Brucella melitensis 16M

Site:
position = -195
score = 5.01333
sequence = AGCTTAAATTTTAAGCA

Gene: BMEI0167: Ammonium transporter
 
Bartonella quintana str. Toulouse
 2
Rhodopseudomonas palustris CGA009

Gene: RPA0273: Ammonium transporter

Gene: RPA0275: Ammonium transporter
 3
Bradyrhizobium japonicum USDA 110

Gene: blr0608: Ammonium transporter

Gene: blr0607: Ammonium transporter

Gene: blr0613: Ammonium transporter
 2
Bradyrhizobium sp. BTAi1

Gene: BBta_0292: Ammonium transporter

Gene: BBta_0294: Ammonium transporter
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4226: Ammonium transporter
 
Xanthobacter autotrophicus Py2

Gene: Xaut_2208: Ammonium transporter
Ammonium transporter
 
CRON 3.
urtA
 
Sinorhizobium meliloti 1021

Gene: SMb20605: Urea ABC transporter, substrate-binding component
 
Rhizobium sp. NGR234

Gene: NGR_b21780: Urea ABC transporter, substrate-binding component
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3741: Urea ABC transporter, substrate-binding component
 
Rhizobium etli CFN 42

Gene: RHE_CH03317: Urea ABC transporter, substrate-binding component
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2414: Urea ABC transporter, substrate-binding component
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mll0762: Urea ABC transporter, substrate-binding component
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
*
Rhodopseudomonas palustris CGA009

Site:
position = -246
score = 4.02468
sequence = AGTGCAATAATTAATCA

Site:
position = -216
score = 4.26189
sequence = TGATCAATTGTTGTGCT

Gene: RPA3669: Urea ABC transporter, substrate-binding component
*
Bradyrhizobium japonicum USDA 110

Site:
position = -111
score = 4.35681
sequence = TGCTCAATAAATGAACT

Site:
position = -67
score = 4.91057
sequence = TGCACAAATCTTGAGCA

Gene: blr1448: Urea ABC transporter, substrate-binding component
*
Bradyrhizobium sp. BTAi1

Site:
position = -175
score = 4.68599
sequence = TGCTCAAAAAATGGGCT

Site:
position = -219
score = 3.86542
sequence = TGCACAAATTTGGCGCT

Site:
position = -248
score = 4.35645
sequence = TGCTTTAAAATTAGTCA

Gene: BBta_7018: Urea ABC transporter, substrate-binding component
 
Nitrobacter winogradskyi Nb-255
*
Azorhizobium caulinodans ORS 571

Site:
position = -179
score = 4.58036
sequence = TGCCTAAATTATAGTCA

Gene: AZC_1758: Urea ABC transporter, substrate-binding component
*
Xanthobacter autotrophicus Py2

Site:
position = -331
score = 3.80334
sequence = TGCCCTCAAAATAGGCA

Gene: Xaut_4149: Urea ABC transporter, substrate-binding component
Urea ABC transporter, substrate-binding component
urtB
 
Sinorhizobium meliloti 1021

Gene: SMb20604: Urea ABC transporter, permease component 1
 
Rhizobium sp. NGR234

Gene: NGR_b21770: Urea ABC transporter, permease component 1
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3740: Urea ABC transporter, permease component 1
 
Rhizobium etli CFN 42

Gene: RHE_CH03316: Urea ABC transporter, permease component 1
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2413: Urea ABC transporter, permease component 1
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mll0760: Urea ABC transporter, permease component 1
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3668: Urea ABC transporter, permease component 1
 
Bradyrhizobium japonicum USDA 110

Gene: blr1449: Urea ABC transporter, permease component 1
 
Bradyrhizobium sp. BTAi1

Gene: BBta_7017: Urea ABC transporter, permease component 1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1759: Urea ABC transporter, permease component 1
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4150: Urea ABC transporter, permease component 1
Urea ABC transporter, permease component 1
urtC
 
Sinorhizobium meliloti 1021

Gene: SMb20603: Urea ABC transporter, permease component 2
 
Rhizobium sp. NGR234

Gene: NGR_b21760: Urea ABC transporter, permease component 2
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3739: Urea ABC transporter, permease component 2
 
Rhizobium etli CFN 42

Gene: RHE_CH03315: Urea ABC transporter, permease component 2
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2412: Urea ABC transporter, permease component 2
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mll0759: Urea ABC transporter, permease component 2
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3667: Urea ABC transporter, permease component 2
 
Bradyrhizobium japonicum USDA 110

Gene: blr1450: Urea ABC transporter, permease component 2
 
Bradyrhizobium sp. BTAi1

Gene: BBta_7016: Urea ABC transporter, permease component 2
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1760: Urea ABC transporter, permease component 2
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4151: Urea ABC transporter, permease component 2
Urea ABC transporter, permease component 2
urtD
 
Sinorhizobium meliloti 1021

Gene: SMb20602: Urea ABC transporter, ATP-binding component 1
 
Rhizobium sp. NGR234

Gene: NGR_b21750: Urea ABC transporter, ATP-binding component 1
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3738: Urea ABC transporter, ATP-binding component 1
 
Rhizobium etli CFN 42

Gene: RHE_CH03314: Urea ABC transporter, ATP-binding component 1
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2411: Urea ABC transporter, ATP-binding component 1
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mll0758: Urea ABC transporter, ATP-binding component 1
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3666: Urea ABC transporter, ATP-binding component 1
 
Bradyrhizobium japonicum USDA 110

Gene: blr1451: Urea ABC transporter, ATP-binding component 1
 
Bradyrhizobium sp. BTAi1

Gene: BBta_7015: Urea ABC transporter, ATP-binding component 1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1761: Urea ABC transporter, ATP-binding component 1
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4152: Urea ABC transporter, ATP-binding component 1
Urea ABC transporter, ATP-binding component 1
urtE
 
Sinorhizobium meliloti 1021

Gene: SMb21707: Urea ABC transporter, ATP-binding component 2
 
Rhizobium sp. NGR234

Gene: NGR_b21740: Urea ABC transporter, ATP-binding component 2
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3737: Urea ABC transporter, ATP-binding component 2
 
Rhizobium etli CFN 42

Gene: RHE_CH03312: Urea ABC transporter, ATP-binding component 2
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2410: Urea ABC transporter, ATP-binding component 2
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mll0756: Urea ABC transporter, ATP-binding component 2
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3665: Urea ABC transporter, ATP-binding component 2
 
Bradyrhizobium japonicum USDA 110

Gene: blr1452: Urea ABC transporter, ATP-binding component 2
 
Bradyrhizobium sp. BTAi1

Gene: BBta_7014: Urea ABC transporter, ATP-binding component 2
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1762: Urea ABC transporter, ATP-binding component 2
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4153: Urea ABC transporter, ATP-binding component 2
Urea ABC transporter, ATP-binding component 2
ureD
 
Sinorhizobium meliloti 1021

Gene: SMc01942: Urease accessory protein, UreD
 
Rhizobium sp. NGR234

Gene: NGR_c25060: Urease accessory protein, UreD
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3736: Urease accessory protein, UreD
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2408: Urease accessory protein, UreD
 
Mesorhizobium sp. BNC1

Gene: Meso_2680: Urease accessory protein, UreD
 
Mesorhizobium loti MAFF303099

Gene: mll4949: Urease accessory protein, UreD
 
Brucella melitensis 16M

Gene: BMEI1655: Urease accessory protein, UreD
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3664: Urease accessory protein, UreD
 
Bradyrhizobium japonicum USDA 110

Gene: blr1453: Urease accessory protein, UreD
 
Bradyrhizobium sp. BTAi1

Gene: BBta_7013: Urease accessory protein, UreD
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1763: Urease accessory protein, UreD
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4154: Urease accessory protein, UreD
Urease accessory protein, UreD
ureA
 
Sinorhizobium meliloti 1021

Gene: SMc01941: Urease, gamma subunit (EC 3.5.1.5)
 
Rhizobium sp. NGR234

Gene: NGR_c25050: Urease, gamma subunit (EC 3.5.1.5)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3735: Urease, gamma subunit (EC 3.5.1.5)
 
Rhizobium etli CFN 42

Gene: RHE_CH03310: Urease, gamma subunit (EC 3.5.1.5)
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2407: Urease, gamma subunit (EC 3.5.1.5)
 
Mesorhizobium sp. BNC1

Gene: Meso_2681: Urease, gamma subunit (EC 3.5.1.5)
 
Mesorhizobium loti MAFF303099

Gene: mll4948: Urease, gamma subunit (EC 3.5.1.5)
 
Brucella melitensis 16M

Gene: BMEI1654: Urease, gamma subunit (EC 3.5.1.5)
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3663: Urease, gamma subunit (EC 3.5.1.5)
 
Bradyrhizobium japonicum USDA 110

Gene: blr1454: Urease, gamma subunit (EC 3.5.1.5)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_7012: Urease, gamma subunit (EC 3.5.1.5)
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1764: Urease, gamma subunit (EC 3.5.1.5)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4155: Urease, gamma subunit (EC 3.5.1.5)
Urease, gamma subunit (EC 3.5.1.5)
ureB
 
Sinorhizobium meliloti 1021

Gene: SMc01939: Urease, beta subunit (EC 3.5.1.5)
 
Rhizobium sp. NGR234

Gene: NGR_c25030: Urease, beta subunit (EC 3.5.1.5)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3734: Urease, beta subunit (EC 3.5.1.5)
 
Rhizobium etli CFN 42

Gene: RHE_CH03308: Urease, beta subunit (EC 3.5.1.5)
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2405: Urease, beta subunit (EC 3.5.1.5)
 
Mesorhizobium sp. BNC1

Gene: Meso_2683: Urease, beta subunit (EC 3.5.1.5)
 
Mesorhizobium loti MAFF303099

Gene: msl4944: Urease, beta subunit (EC 3.5.1.5)
 
Brucella melitensis 16M

Gene: BMEI1653: Urease, beta subunit (EC 3.5.1.5)
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3662: Urease, beta subunit (EC 3.5.1.5)
 
Bradyrhizobium japonicum USDA 110

Gene: blr1455: Urease, beta subunit (EC 3.5.1.5)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_7011: Urease, beta subunit (EC 3.5.1.5)
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Urease, beta subunit (EC 3.5.1.5)
RPA3661
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3661: Metal dependent phosphohydrolase
 
Bradyrhizobium japonicum USDA 110

Gene: blr1456: Metal dependent phosphohydrolase
 
Bradyrhizobium sp. BTAi1

Gene: BBta_7010: Metal dependent phosphohydrolase
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Metal dependent phosphohydrolase
ureC
 
Sinorhizobium meliloti 1021

Gene: SMc01837: Urease, alpha subunit (EC 3.5.1.5)
 
Rhizobium sp. NGR234

Gene: NGR_c25000: Urease, alpha subunit (EC 3.5.1.5)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3731: Urease, alpha subunit (EC 3.5.1.5)
 
Rhizobium etli CFN 42

Gene: RHE_CH03305: Urease, alpha subunit (EC 3.5.1.5)
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu2401: Urease, alpha subunit (EC 3.5.1.5)
 
Mesorhizobium sp. BNC1

Gene: Meso_2684: Urease, alpha subunit (EC 3.5.1.5)
 
Mesorhizobium loti MAFF303099

Gene: mll4940: Urease, alpha subunit (EC 3.5.1.5)
 
Brucella melitensis 16M

Gene: BMEI1652: Urease, alpha subunit (EC 3.5.1.5)
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3660: Urease, alpha subunit (EC 3.5.1.5)
 
Bradyrhizobium japonicum USDA 110

Gene: blr1457: Urease, alpha subunit (EC 3.5.1.5)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_7009: Urease, alpha subunit (EC 3.5.1.5)
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1766: Urease, alpha subunit (EC 3.5.1.5)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4156: Urease, alpha subunit (EC 3.5.1.5)
Urease, alpha subunit (EC 3.5.1.5)
 
CRON 4.
uctA
 
Sinorhizobium meliloti 1021
*
Rhizobium sp. NGR234

Site:
position = -286
score = 4.68037
sequence = TGATCATTTTATAAGCA

Site:
position = -265
score = 4.58342
sequence = TGCACAAATTATGGGCG

Gene: NGR_b03900: Urea carboxylase-related ABC transporter, substrate-binding component
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -299
score = 3.97402
sequence = CGCACATTTTCTGTGCA

Site:
position = -222
score = 3.79759
sequence = TGATTTATAATTTGGCA

Gene: pRL90288: Urea carboxylase-related ABC transporter, substrate-binding component
*
Rhizobium etli CFN 42

Site:
position = -299
score = 4.7398
sequence = TGCTCAAAAATTTAGCA

Gene: RHE_PE00123: Urea carboxylase-related ABC transporter, substrate-binding component
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
*
Rhodopseudomonas palustris CGA009

Site:
position = -243
score = 3.74305
sequence = TGCACATTGTTTGTGCC

Gene: RPA1410: Urea carboxylase-related ABC transporter, substrate-binding component
 
Bradyrhizobium japonicum USDA 110
*
Bradyrhizobium sp. BTAi1

Site:
position = -264
score = 3.95388
sequence = TGCCAATTTCTTGGGCA

Gene: BBta_0739: Urea carboxylase-related ABC transporter, substrate-binding component
 
Nitrobacter winogradskyi Nb-255
*
Azorhizobium caulinodans ORS 571

Site:
position = -230
score = 3.84209
sequence = TGGCTAAAATTTAGACA

Gene: AZC_4397: Urea carboxylase-related ABC transporter, substrate-binding component
*
Xanthobacter autotrophicus Py2

Site:
position = -300
score = 4.84236
sequence = TGCTTAAATTTTGATCG

Gene: Xaut_1227: Urea carboxylase-related ABC transporter, substrate-binding component
Urea carboxylase-related ABC transporter, substrate-binding component
uctB
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234

Gene: NGR_b03890: Urea carboxylase-related ABC transporter, permease component
 
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL90289: Urea carboxylase-related ABC transporter, permease component
 
Rhizobium etli CFN 42

Gene: RHE_PE00122: Urea carboxylase-related ABC transporter, permease component
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA1409: Urea carboxylase-related ABC transporter, permease component
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1

Gene: BBta_0741: Urea carboxylase-related ABC transporter, permease component
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4398: Urea carboxylase-related ABC transporter, permease component
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1226: Urea carboxylase-related ABC transporter, permease component
Urea carboxylase-related ABC transporter, permease component
uctC
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234

Gene: NGR_b03880: Urea carboxylase-related ABC transporter, ATP-binding component
 
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL90290: Urea carboxylase-related ABC transporter, ATP-binding component
 
Rhizobium etli CFN 42

Gene: RHE_PE00121: Urea carboxylase-related ABC transporter, ATP-binding component
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA1408: Urea carboxylase-related ABC transporter, ATP-binding component
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1

Gene: BBta_0742: Urea carboxylase-related ABC transporter, ATP-binding component
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4399: Urea carboxylase-related ABC transporter, ATP-binding component
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1225: Urea carboxylase-related ABC transporter, ATP-binding component
Urea carboxylase-related ABC transporter, ATP-binding component
uahC
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL90291: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Rhizobium etli CFN 42

Gene: RHE_PE00120: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA1407: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4400: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1224: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
uahB
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL90292: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Rhizobium etli CFN 42

Gene: RHE_PE00119: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA1406: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4401: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1223: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
uahA
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL90293: Urea carboxylase (EC 6.3.4.6)
 
Rhizobium etli CFN 42

Gene: RHE_PE00118: Urea carboxylase (EC 6.3.4.6)
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA1405: Urea carboxylase (EC 6.3.4.6)
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4402: Urea carboxylase (EC 6.3.4.6)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1222: Urea carboxylase (EC 6.3.4.6)
Urea carboxylase (EC 6.3.4.6)
atzF
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL90294: Allophanate hydrolase (EC 3.5.1.54)
 
Rhizobium etli CFN 42

Gene: RHE_PE00117: Allophanate hydrolase (EC 3.5.1.54)
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Allophanate hydrolase (EC 3.5.1.54)
atzF2
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4403: Allophanate hydrolase (EC 3.5.1.54)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1221: Allophanate hydrolase (EC 3.5.1.54)
Allophanate hydrolase (EC 3.5.1.54)
speB
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234

Gene: NGR_b03870: Agmatinase (EC 3.5.3.11)
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1

Gene: BBta_0743: Agmatinase (EC 3.5.3.11)
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Agmatinase (EC 3.5.3.11)
NGR_b03860
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234

Gene: NGR_b03860: Hypothetical protein
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1

Gene: BBta_0744: Hypothetical protein
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Hypothetical protein
 
CRON 5.
glnB
*
Sinorhizobium meliloti 1021

Site:
position = -286
score = 4.35868
sequence = TGACTAAGAAATGTGCA

Site:
position = -254
score = 4.10616
sequence = TGCTCAAATAACATGCT

Gene: SMc00947: Nitrogen regulatory protein P-II
*
Rhizobium sp. NGR234

Site:
position = -287
score = 4.31792
sequence = TGATGACTTATTATGCA

Site:
position = -255
score = 4.07414
sequence = TGCTCAAATAACAGGCT

Gene: NGR_c14750: Nitrogen regulatory protein P-II
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -269
score = 4.15204
sequence = TGCCTATATTTTCATCT

Gene: RL2393: Nitrogen regulatory protein P-II
*
Rhizobium etli CFN 42

Site:
position = -287
score = 3.84751
sequence = AGACCCAAATTTGTGCA

Site:
position = -268
score = 4.40488
sequence = TGCTTATCTTTTAATCA

Gene: RHE_CH02103: Nitrogen regulatory protein P-II
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -297
score = 4.11985
sequence = AGACCAAATAATAGTCA

Site:
position = -278
score = 4.47473
sequence = TGCACAAAATATAAACA

Gene: Atu1769: Nitrogen regulatory protein P-II
 
Mesorhizobium sp. BNC1
*
Mesorhizobium loti MAFF303099

Site:
position = -222
score = 4.52948
sequence = TGCCTAATTCTTATGCG

Gene: mll0345: Nitrogen regulatory protein P-II
*
Brucella melitensis 16M

Site:
position = -220
score = 5.20311
sequence = TGCATAATTTTTAAGCA

Gene: BMEI0978: Nitrogen regulatory protein P-II
 
Bartonella quintana str. Toulouse

Gene: BQ07880: Nitrogen regulatory protein P-II
*
Rhodopseudomonas palustris CGA009

Site:
position = -320
score = 4.84201
sequence = TGCTGAATAATTGATCA

Gene: RPA2966: Nitrogen regulatory protein P-II
*
Bradyrhizobium japonicum USDA 110

Site:
position = -290
score = 3.63492
sequence = TGCCTATTTCGTAGTCT

Gene: blr4948: Nitrogen regulatory protein P-II
*
Bradyrhizobium sp. BTAi1

Site:
position = -300
score = 3.75361
sequence = TGCACAACGTTTGATCT

Gene: BBta_4580: Nitrogen regulatory protein P-II
*
Nitrobacter winogradskyi Nb-255

Site:
position = -298
score = 4.47034
sequence = CGCACAAAAATTGAACA

Gene: Nwi_1903: Nitrogen regulatory protein P-II
*
Azorhizobium caulinodans ORS 571

Site:
position = -134
score = 4.40436
sequence = CGCATACTATTTAGGCA

Gene: AZC_1602: Nitrogen regulatory protein P-II
*
Xanthobacter autotrophicus Py2

Site:
position = -138
score = 4.18316
sequence = AGCCTATTTCATGAGCA

Gene: Xaut_3586: Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II
glnA
 
Sinorhizobium meliloti 1021

Gene: SMc00948: Glutamine synthetase type I (EC 6.3.1.2)
 
Rhizobium sp. NGR234

Gene: NGR_c14740: Glutamine synthetase type I (EC 6.3.1.2)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL2392: Glutamine synthetase type I (EC 6.3.1.2)
 
Rhizobium etli CFN 42

Gene: RHE_CH02102: Glutamine synthetase type I (EC 6.3.1.2)
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu1770: Glutamine synthetase type I (EC 6.3.1.2)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mll0343: Glutamine synthetase type I (EC 6.3.1.2)
 
Brucella melitensis 16M

Gene: BMEI0979: Glutamine synthetase type I (EC 6.3.1.2)
 
Bartonella quintana str. Toulouse

Gene: BQ07890: Glutamine synthetase type I (EC 6.3.1.2)
 
Rhodopseudomonas palustris CGA009

Gene: RPA2967: Glutamine synthetase type I (EC 6.3.1.2)
 2
Bradyrhizobium japonicum USDA 110

Gene: blr4949: Glutamine synthetase type I (EC 6.3.1.2)

Gene: blr4835: Glutamine synthetase type I (EC 6.3.1.2)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_4581: Glutamine synthetase type I (EC 6.3.1.2)
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_1904: Glutamine synthetase type I (EC 6.3.1.2)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1601: Glutamine synthetase type I (EC 6.3.1.2)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_3585: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
 
CRON 6.
dppA
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
*
Rhodopseudomonas palustris CGA009

Site:
position = -132
score = 4.88022
sequence = TGCACATTATTTATGCA

Gene: RPA1473: Dipeptide ABC transporter, substrate-binding component
*
Bradyrhizobium japonicum USDA 110

Site:
position = -190
score = 4.54965
sequence = CGATGAAATTTTGAGCA

Gene: blr1036: Dipeptide ABC transporter, substrate-binding component
*
Bradyrhizobium sp. BTAi1

Site:
position = -161
score = 4.84695
sequence = AGCTCAATAAATAAGCA

Gene: BBta_0716: Dipeptide ABC transporter, substrate-binding component
 
Nitrobacter winogradskyi Nb-255
*
Azorhizobium caulinodans ORS 571

Site:
position = -159
score = 4.8327
sequence = TGCTCAATTTTTAATCT

Gene: AZC_1511: Dipeptide ABC transporter, substrate-binding component
*
Xanthobacter autotrophicus Py2

Site:
position = -159
score = 4.89613
sequence = TGCGTAATTATTGTGCA

Gene: Xaut_4660: Dipeptide ABC transporter, substrate-binding component
Dipeptide ABC transporter, substrate-binding component
dppB
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA1472: Dipeptide ABC transporter, permease component 1
 
Bradyrhizobium japonicum USDA 110

Gene: blr1037: Dipeptide ABC transporter, permease component 1
 
Bradyrhizobium sp. BTAi1

Gene: BBta_0717: Dipeptide ABC transporter, permease component 1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1512: Dipeptide ABC transporter, permease component 1
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4659: Dipeptide ABC transporter, permease component 1
Dipeptide ABC transporter, permease component 1
dppC
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA1471: Dipeptide ABC transporter, permease component 2
 
Bradyrhizobium japonicum USDA 110

Gene: blr1038: Dipeptide ABC transporter, permease component 2
 
Bradyrhizobium sp. BTAi1

Gene: BBta_0718: Dipeptide ABC transporter, permease component 2
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1513: Dipeptide ABC transporter, permease component 2
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4658: Dipeptide ABC transporter, permease component 2
Dipeptide ABC transporter, permease component 2
dppDE
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA1470: Dipeptide ABC transporter, ATP-binding component
 
Bradyrhizobium japonicum USDA 110

Gene: blr1039: Dipeptide ABC transporter, ATP-binding component
 
Bradyrhizobium sp. BTAi1

Gene: BBta_0719: Dipeptide ABC transporter, ATP-binding component
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571

Gene: AZC_1514: Dipeptide ABC transporter, ATP-binding component
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4657: Dipeptide ABC transporter, ATP-binding component
Dipeptide ABC transporter, ATP-binding component
 
CRON 7.
nifR3
*
Sinorhizobium meliloti 1021

Site:
position = -25
score = 3.96229
sequence = TGTCTAAAAATAGTGCA

Gene: SMc01041: Predicted oxidoreductase, FAD binding
*
Rhizobium sp. NGR234

Site:
position = -25
score = 3.96229
sequence = TGTCTAAAAATAGTGCA

Gene: NGR_c12950: Predicted oxidoreductase, FAD binding
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -25
score = 3.78543
sequence = TGGCTAAAAATAATGCA

Gene: RL2255: Predicted oxidoreductase, FAD binding
*
Rhizobium etli CFN 42

Site:
position = -88
score = 3.78543
sequence = TGGCTAAAAATAATGCA

Gene: RHE_CH01946: Predicted oxidoreductase, FAD binding
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -31
score = 3.95685
sequence = TGTCTAAAAATAATGCA

Gene: Atu1444: Predicted oxidoreductase, FAD binding
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mlr0396: Predicted oxidoreductase, FAD binding
*
Brucella melitensis 16M

Site:
position = -48
score = 3.83212
sequence = TGATTAAACTGTATGCG

Site:
position = -21
score = 3.91456
sequence = TGCATATCAAATAGGCG

Gene: BMEI0864: Predicted oxidoreductase, FAD binding
 
Bartonella quintana str. Toulouse
*
Rhodopseudomonas palustris CGA009

Site:
position = -92
score = 4.59201
sequence = TGCTCAAACATTGAGCG

Gene: RPA2591: Predicted oxidoreductase, FAD binding
 
Bradyrhizobium japonicum USDA 110

Gene: blr4486: Predicted oxidoreductase, FAD binding
*
Bradyrhizobium sp. BTAi1

Site:
position = -149
score = 4.50857
sequence = TGCCCAAGAATTGTGCT

Gene: BBta_4068: Predicted oxidoreductase, FAD binding
*
Nitrobacter winogradskyi Nb-255

Site:
position = -47
score = 4.69725
sequence = TGCCTAATAAATAAGCT

Gene: Nwi_1443: Predicted oxidoreductase, FAD binding
 
Azorhizobium caulinodans ORS 571

Gene: AZC_3088: Predicted oxidoreductase, FAD binding
*
Xanthobacter autotrophicus Py2

Site:
position = -39
score = 3.8214
sequence = TGTCTAAGATGTAGGCA

Gene: Xaut_4401: Predicted oxidoreductase, FAD binding
Predicted oxidoreductase, FAD binding
ntrB
 
Sinorhizobium meliloti 1021

Gene: SMc01042: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Rhizobium sp. NGR234

Gene: NGR_c12960: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL2256: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Rhizobium etli CFN 42

Gene: RHE_CH01947: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu1445: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mlr0397: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Brucella melitensis 16M

Gene: BMEI0865: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA2592: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Bradyrhizobium japonicum USDA 110

Gene: blr4487: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_4069: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_1444: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_3087: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4400: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Sinorhizobium meliloti 1021

Gene: SMc01043: Nitrogen regulation protein NR(I), Fis family
 
Rhizobium sp. NGR234

Gene: NGR_c12970: Nitrogen regulation protein NR(I), Fis family
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL2257: Nitrogen regulation protein NR(I), Fis family
 
Rhizobium etli CFN 42

Gene: RHE_CH01948: Nitrogen regulation protein NR(I), Fis family
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu1446: Nitrogen regulation protein NR(I), Fis family
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099

Gene: mlr0398: Nitrogen regulation protein NR(I), Fis family
 
Brucella melitensis 16M

Gene: BMEI0866: Nitrogen regulation protein NR(I), Fis family
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA2593: Nitrogen regulation protein NR(I), Fis family
 
Bradyrhizobium japonicum USDA 110

Gene: blr4488: Nitrogen regulation protein NR(I), Fis family
 
Bradyrhizobium sp. BTAi1

Gene: BBta_4070: Nitrogen regulation protein NR(I), Fis family
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_1445: Nitrogen regulation protein NR(I), Fis family
 
Azorhizobium caulinodans ORS 571

Gene: AZC_3086: Nitrogen regulation protein NR(I), Fis family
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4399: Nitrogen regulation protein NR(I), Fis family
Nitrogen regulation protein NR(I), Fis family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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