Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 27 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243 7 2
Burkholderia mallei ATCC 23344 8 2
Burkholderia sp. 383 8 3
Burkholderia cepacia AMMD 8 3
Burkholderia vietnamiensis G4 8 3
Burkholderia glumae BGR1 7 2
Burkholderia xenovorans LB400 6 2
Burkholderia phymatum STM815 7 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glnA
*
Burkholderia pseudomallei K96243

Site:
position = -312
score = 4.73355
sequence = CGCACTAAAGCGGTGCA

Site:
position = -283
score = 5.00357
sequence = AGCACCAAATTGGTGTT

Gene: BPSL2318: Glutamine synthetase type I (EC 6.3.1.2)
*
Burkholderia mallei ATCC 23344

Site:
position = -312
score = 4.73355
sequence = CGCACTAAAGCGGTGCA

Site:
position = -283
score = 4.947
sequence = AGCACCAAATTAGTGTT

Gene: BMA1743: Glutamine synthetase type I (EC 6.3.1.2)
*
Burkholderia sp. 383

Site:
position = -242
score = 4.20337
sequence = TGCACCAGCGCGGTGCC

Gene: Bcep18194_A5458: Glutamine synthetase type I (EC 6.3.1.2)
*
Burkholderia cepacia AMMD

Site:
position = -242
score = 5.14942
sequence = TGCACCATTTCAGTGCG

Gene: Bamb_2186: Glutamine synthetase type I (EC 6.3.1.2)
*
Burkholderia vietnamiensis G4

Site:
position = -282
score = 4.83297
sequence = TGCACCGAATCGGCGCT

Gene: Bcep1808_2228: Glutamine synthetase type I (EC 6.3.1.2)
*
Burkholderia glumae BGR1

Site:
position = -275
score = 4.79019
sequence = CGCATTGATTTGGTGCG

Site:
position = -315
score = 4.59026
sequence = ATCACCAAAATGGTGCG

Gene: bglu_1g25000: Glutamine synthetase type I (EC 6.3.1.2)
*
Burkholderia xenovorans LB400

Site:
position = -266
score = 4.86085
sequence = TGCACAAATCTGGTGCG

Gene: Bxe_A1522: Glutamine synthetase type I (EC 6.3.1.2)
*
Burkholderia phymatum STM815

Site:
position = -273
score = 4.39007
sequence = TGCCCTGTGATGGTGCA

Gene: Bphy_1481: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
ISBma2
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344

Gene: BMA1742: Transposase, IS4
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815
Transposase, IS4
ntrB
 
Burkholderia pseudomallei K96243

Gene: BPSL2317: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Burkholderia mallei ATCC 23344

Gene: BMA1741: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Burkholderia sp. 383

Gene: Bcep18194_A5457: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Burkholderia cepacia AMMD

Gene: Bamb_2185: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_2227: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Burkholderia glumae BGR1

Gene: bglu_1g24990: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Burkholderia xenovorans LB400

Gene: Bxe_A1523: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Burkholderia phymatum STM815

Gene: Bphy_1480: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Burkholderia pseudomallei K96243

Gene: BPSL2316: Nitrogen regulation protein NR(I), Fis family
 
Burkholderia mallei ATCC 23344

Gene: BMA1740: Nitrogen regulation protein NR(I), Fis family
 
Burkholderia sp. 383

Gene: Bcep18194_A5456: Nitrogen regulation protein NR(I), Fis family
 
Burkholderia cepacia AMMD

Gene: Bamb_2184: Nitrogen regulation protein NR(I), Fis family
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_2226: Nitrogen regulation protein NR(I), Fis family
 
Burkholderia glumae BGR1

Gene: bglu_1g24980: Nitrogen regulation protein NR(I), Fis family
 
Burkholderia xenovorans LB400

Gene: Bxe_A1524: Nitrogen regulation protein NR(I), Fis family
 
Burkholderia phymatum STM815

Gene: Bphy_1479: Nitrogen regulation protein NR(I), Fis family
Nitrogen regulation protein NR(I), Fis family
 
CRON 2.
narK
*
Burkholderia pseudomallei K96243

Site:
position = -294
score = 4.03128
sequence = CGCACGCACACAGTGCT

Site:
position = -273
score = 5.23909
sequence = CGCACCAGATCAGTGCT

Gene: BPSS1244: Nitrate/nitrite antiporter
*
Burkholderia mallei ATCC 23344

Site:
position = -273
score = 5.23909
sequence = CGCACCAGATCAGTGCT

Site:
position = -294
score = 4.03128
sequence = CGCACGCACACAGTGCT

Gene: BMAA1087: Nitrate/nitrite antiporter
*
Burkholderia sp. 383

Site:
position = -305
score = 4.48357
sequence = CGCACGGGGACAGTGCT

Site:
position = -284
score = 4.06085
sequence = CGCACCACATCTGTGCC

Gene: Bcep18194_B1343: Nitrate/nitrite antiporter
*
Burkholderia cepacia AMMD

Site:
position = -288
score = 4.06085
sequence = CGCACCACATCTGTGCC

Site:
position = -309
score = 4.01772
sequence = CGCACGGCGACAGTGCT

Gene: Bamb_3937: Nitrate/nitrite antiporter
*
Burkholderia vietnamiensis G4

Site:
position = -303
score = 4.04395
sequence = CGCACGGCGATAGTGCT

Site:
position = -282
score = 4.06085
sequence = CGCACCACATCTGTGCC

Gene: Bcep1808_5046: Nitrate/nitrite antiporter
*
Burkholderia glumae BGR1

Site:
position = -296
score = 4.10749
sequence = CGCACGCGCTTAGTGCT

Gene: bglu_2g10010: Nitrate/nitrite antiporter
 
Burkholderia xenovorans LB400
*
Burkholderia phymatum STM815

Site:
position = -272
score = 4.61265
sequence = TGCACCAGCCCAGTGCC

Gene: Bphy_5658: Nitrate/nitrite antiporter
Nitrate/nitrite antiporter
nasD
 
Burkholderia pseudomallei K96243

Gene: BPSS1243: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Burkholderia mallei ATCC 23344

Gene: BMAA1086: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Burkholderia sp. 383

Gene: Bcep18194_B1344: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Burkholderia cepacia AMMD

Gene: Bamb_3936: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_5045: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Burkholderia glumae BGR1

Gene: bglu_2g10020: Nitrite reductase, large subunit (EC 1.7.1.4)
*
Burkholderia xenovorans LB400

Site:
position = -284
score = 4.01332
sequence = CGCACCATGCGTGTGCT

Gene: Bxe_A2214: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Burkholderia phymatum STM815

Gene: Bphy_5659: Nitrite reductase, large subunit (EC 1.7.1.4)
Nitrite reductase, large subunit (EC 1.7.1.4)
nasE
 
Burkholderia pseudomallei K96243

Gene: BPSS1242: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Burkholderia mallei ATCC 23344

Gene: BMAA1085: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Burkholderia sp. 383

Gene: Bcep18194_B1345: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Burkholderia cepacia AMMD

Gene: Bamb_3935: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_5044: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Burkholderia glumae BGR1

Gene: bglu_2g10030: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Burkholderia xenovorans LB400

Gene: Bxe_A2213: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Burkholderia phymatum STM815

Gene: Bphy_5660: Nitrite reductase, small subunit (EC 1.7.1.4)
Nitrite reductase, small subunit (EC 1.7.1.4)
nasBA
 
Burkholderia pseudomallei K96243

Gene: BPSS1241: Assimilatory nitrate reductase, large and small subunits protein fusion (EC:1.7.99.4)
 
Burkholderia mallei ATCC 23344

Gene: BMAA1084: Assimilatory nitrate reductase, large and small subunits protein fusion (EC:1.7.99.4)
 
Burkholderia sp. 383

Gene: Bcep18194_B1346: Assimilatory nitrate reductase, large and small subunits protein fusion (EC:1.7.99.4)
 
Burkholderia cepacia AMMD

Gene: Bamb_3934: Assimilatory nitrate reductase, large and small subunits protein fusion (EC:1.7.99.4)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_5043: Assimilatory nitrate reductase, large and small subunits protein fusion (EC:1.7.99.4)
 
Burkholderia glumae BGR1

Gene: bglu_2g10040: Assimilatory nitrate reductase, large and small subunits protein fusion (EC:1.7.99.4)
 
Burkholderia xenovorans LB400

Gene: Bxe_A2212: Assimilatory nitrate reductase, large and small subunits protein fusion (EC:1.7.99.4)
 
Burkholderia phymatum STM815

Gene: Bphy_5661: Assimilatory nitrate reductase, large and small subunits protein fusion (EC:1.7.99.4)
Assimilatory nitrate reductase, large and small subunits protein fusion (EC:1.7.99.4)
 
CRON 3.
amtB
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -274
score = 4.58351
sequence = CGCGCCGGAACGGTGCG

Gene: Bcep18194_A4310: Ammonia permease
*
Burkholderia cepacia AMMD

Site:
position = -255
score = 4.63886
sequence = CGCGCCAGACCGGTGCA

Gene: Bamb_1085: Ammonia permease
*
Burkholderia vietnamiensis G4

Site:
position = -253
score = 4.63886
sequence = CGCACCAGACCGGCGCA

Gene: Bcep1808_1116: Ammonia permease
 
Burkholderia glumae BGR1

Gene: bglu_1g10270: Ammonia permease
 
Burkholderia xenovorans LB400

Gene: Bxe_A2869: Ammonia permease
 
Burkholderia phymatum STM815

Gene: Bphy_1761: Ammonia permease
Ammonia permease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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