Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Xylella fastidiosa 9a5c 3 2
Xanthomonas axonopodis pv. citri str. 306 3 2
Xanthomonas campestris pv. campestris str. ATCC 33913 3 2
Stenotrophomonas maltophilia K279a 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ntrB
*
Xylella fastidiosa 9a5c

Site:
position = -17
score = 5.08118
sequence = GGCCCTACATTGGTGCA

Gene: XF1849: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -17
score = 6.1731
sequence = TGCACTAAATTGGTGCA

Gene: XAC0207: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -23
score = 6.1731
sequence = TGCACTAAATTGGTGCA

Gene: XCC0188: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Stenotrophomonas maltophilia K279a

Site:
position = -17
score = 5.99518
sequence = TGCACTACATTGGTGCA

Gene: Smlt0158: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Xylella fastidiosa 9a5c

Gene: XF1848: Nitrogen regulation protein NR(I), Fis family
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC0208: Nitrogen regulation protein NR(I), Fis family
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC0189: Nitrogen regulation protein NR(I), Fis family
 
Stenotrophomonas maltophilia K279a

Gene: Smlt0159: Nitrogen regulation protein NR(I), Fis family
Nitrogen regulation protein NR(I), Fis family
 
CRON 2.
glnA
*
Xylella fastidiosa 9a5c

Site:
position = -35
score = 5.16967
sequence = TGCACCATATAAGTGCT

Gene: XF1842: Glutamine synthetase type I (EC 6.3.1.2)
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -172
score = 5.39054
sequence = TGCACCACATCGGTGCG

Site:
position = -142
score = 5.42667
sequence = TGCACCTCAATAGTGCA

Gene: XAC0204: Glutamine synthetase type I (EC 6.3.1.2)
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -173
score = 6.06064
sequence = TGCACCATTTTGGTGCA

Gene: XCC0185: Glutamine synthetase type I (EC 6.3.1.2)
*
Stenotrophomonas maltophilia K279a

Site:
position = -136
score = 5.26081
sequence = TGCACTCGTTTGGTGCG

Site:
position = -165
score = 5.37308
sequence = TGCACCAAACGGGTGCG

Gene: Smlt0151: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD