Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Moraxellaceae

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 27 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acinetobacter sp. ADP1 13 6
Acinetobacter baumannii AB0057 6 4
Psychrobacter arcticum 273-4 2 2
Psychrobacter sp. PRwf-1 4 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG0733
 
Acinetobacter sp. ADP1
 
Acinetobacter baumannii AB0057
*
Psychrobacter arcticum 273-4

Site:
position = -106
score = 4.29744
sequence = TGCGTCACATTGATGCA

Gene: Psyc_1525: Predicted sodium dependent transporter
*
Psychrobacter sp. PRwf-1

Site:
position = -282
score = 4.60448
sequence = TGATTCATTATTAAGCA

Gene: PsycPRwf_1792: Predicted sodium dependent transporter
Predicted sodium dependent transporter
 
CRON 2.
rutA
*
Acinetobacter sp. ADP1

Site:
position = -245
score = 4.55953
sequence = TGCACATTATTGAATCA

Site:
position = -212
score = 4.8145
sequence = TGCAGCAAAATGATTCA

Gene: ACIAD0027: Pyrimidine oxygenase
 
Acinetobacter baumannii AB0057
 
Psychrobacter arcticum 273-4
 
Psychrobacter sp. PRwf-1
Pyrimidine oxygenase
rutB
 
Acinetobacter sp. ADP1

Gene: ACIAD0028: Peroxyureidoacrylate / ureidoacrylate amido hydrolase
 
Acinetobacter baumannii AB0057
 
Psychrobacter arcticum 273-4
 
Psychrobacter sp. PRwf-1
Peroxyureidoacrylate / ureidoacrylate amido hydrolase
rutC
 
Acinetobacter sp. ADP1

Gene: ACIAD0029: Aminoacrylate peracid reductase
 
Acinetobacter baumannii AB0057
 
Psychrobacter arcticum 273-4
 
Psychrobacter sp. PRwf-1
Aminoacrylate peracid reductase
rutF
 
Acinetobacter sp. ADP1

Gene: ACIAD0030: Flavin reductase
 
Acinetobacter baumannii AB0057
 
Psychrobacter arcticum 273-4
 
Psychrobacter sp. PRwf-1
Flavin reductase
rutG
 
Acinetobacter sp. ADP1

Gene: ACIAD0031: Uracil permease
 
Acinetobacter baumannii AB0057
 
Psychrobacter arcticum 273-4
 
Psychrobacter sp. PRwf-1
Uracil permease
rutE2
 
Acinetobacter sp. ADP1

Gene: ACIAD0032: 3-hydroxy propionic acid dehydrogenase
 
Acinetobacter baumannii AB0057
 
Psychrobacter arcticum 273-4
 
Psychrobacter sp. PRwf-1
3-hydroxy propionic acid dehydrogenase
 
CRON 3.
rutR
*
Acinetobacter sp. ADP1

Site:
position = -224
score = 4.55953
sequence = TGATTCAATAATGTGCA

Site:
position = -257
score = 4.8145
sequence = TGAATCATTTTGCTGCA

Gene: ACIAD0026: Pyrimidine catabolism transcriptional regulator RutR, TetR family
 
Acinetobacter baumannii AB0057

Gene: AB57_0065: Pyrimidine catabolism transcriptional regulator RutR, TetR family
 
Psychrobacter arcticum 273-4
 
Psychrobacter sp. PRwf-1
Pyrimidine catabolism transcriptional regulator RutR, TetR family
 
CRON 4.
gdhA
*
Acinetobacter sp. ADP1

Site:
position = -230
score = 4.5939
sequence = TGATCAAAATAGATGCA

Site:
position = -208
score = 4.72818
sequence = TGCATCATAATGAGTCA

Site:
position = -39
score = 5.01454
sequence = TGCACAATATTGATTCA

Gene: ACIAD1110: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
*
Acinetobacter baumannii AB0057

Site:
position = -174
score = 4.82661
sequence = TGCACAATAATAGATCA

Site:
position = -24
score = 4.48423
sequence = TGCTGCTAAATGATGCA

Site:
position = 6
score = 5.10638
sequence = TGCACCAATTTAATTCA

Gene: AB57_1107: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
Psychrobacter arcticum 273-4
 
Psychrobacter sp. PRwf-1
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
 
CRON 5.
gltB
*
Acinetobacter sp. ADP1

Site:
position = -403
score = 4.72486
sequence = TGCACTATTTTGGTTCG

Site:
position = -432
score = 4.25105
sequence = AGCATTAATTTTGATCA

Gene: ACIAD3350: Glutamate synthase, large chain (EC 1.4.1.13)
*
Acinetobacter baumannii AB0057

Site:
position = -446
score = 5.0432
sequence = TGCTCTAAAATAGTGCA

Gene: AB57_3640: Glutamate synthase, large chain (EC 1.4.1.13)
 
Psychrobacter arcticum 273-4

Gene: Psyc_1874: Glutamate synthase, large chain (EC 1.4.1.13)
 
Psychrobacter sp. PRwf-1

Gene: PsycPRwf_0403: Glutamate synthase, large chain (EC 1.4.1.13)
Glutamate synthase, large chain (EC 1.4.1.13)
gltD
 
Acinetobacter sp. ADP1

Gene: ACIAD3349: Glutamate synthase, small chain (EC 1.4.1.13)
 
Acinetobacter baumannii AB0057

Gene: AB57_3639: Glutamate synthase, small chain (EC 1.4.1.13)
 
Psychrobacter arcticum 273-4

Gene: Psyc_1873: Glutamate synthase, small chain (EC 1.4.1.13)
 
Psychrobacter sp. PRwf-1

Gene: PsycPRwf_0404: Glutamate synthase, small chain (EC 1.4.1.13)
Glutamate synthase, small chain (EC 1.4.1.13)
 
CRON 6.
ntrB
*
Acinetobacter sp. ADP1

Site:
position = -217
score = 4.05665
sequence = TGCACCAAAATAATACT

Gene: ACIAD1369: Nitrogen regulation protein ntrB (EC 2.7.3.-)
*
Acinetobacter baumannii AB0057

Site:
position = -219
score = 4.80101
sequence = TGCACCAAGTTGGATCA

Gene: AB57_2323: Nitrogen regulation protein ntrB (EC 2.7.3.-)
 
Psychrobacter arcticum 273-4

Gene: Psyc_1537: Nitrogen regulation protein ntrB (EC 2.7.3.-)
*
Psychrobacter sp. PRwf-1

Site:
position = -93
score = 4.58406
sequence = TGAGCCAATTTGGCGCA

Site:
position = -168
score = 4.80705
sequence = TGCACTAAAATAAATCA

Site:
position = -137
score = 4.66285
sequence = TGCACTATTTATGAGCA

Gene: PsycPRwf_1804: Nitrogen regulation protein ntrB (EC 2.7.3.-)
Nitrogen regulation protein ntrB (EC 2.7.3.-)
ntrC
 
Acinetobacter sp. ADP1

Gene: ACIAD1368: Nitrogen regulation protein NR(I)
 
Acinetobacter baumannii AB0057

Gene: AB57_2324: Nitrogen regulation protein NR(I)
 
Psychrobacter arcticum 273-4

Gene: Psyc_1538: Nitrogen regulation protein NR(I)
 
Psychrobacter sp. PRwf-1

Gene: PsycPRwf_1805: Nitrogen regulation protein NR(I)
Nitrogen regulation protein NR(I)
 
CRON 7.
glnA
*
Acinetobacter sp. ADP1

Site:
position = -239
score = 4.79667
sequence = TGCACCAATATGATGCT

Site:
position = -188
score = 4.63007
sequence = TGATTGAATATGGTGCA

Gene: ACIAD2458: Glutamine synthetase type I (EC 6.3.1.2)
*
Acinetobacter baumannii AB0057

Site:
position = -240
score = 5.01167
sequence = TGCACCAAATTAGGGCA

Site:
position = -188
score = 3.89647
sequence = TGTGTGAATATGGTGCA

Gene: AB57_2783: Glutamine synthetase type I (EC 6.3.1.2)
*
Psychrobacter arcticum 273-4

Site:
position = -462
score = 4.28518
sequence = TGCACTTTTATAGTGCT

Gene: Psyc_0975: Glutamine synthetase type I (EC 6.3.1.2)
*
Psychrobacter sp. PRwf-1

Site:
position = -447
score = 4.79213
sequence = TGCACAATATTGGTGCG

Site:
position = -414
score = 4.21118
sequence = TGCCCTAATTTGGTTTA

Gene: PsycPRwf_1645: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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