Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 49 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 8 4
Pseudomonas entomophila L48 8 5
Pseudomonas putida KT2440 9 5
Pseudomonas syringae pv. tomato str. DC3000 10 5
Pseudomonas fluorescens Pf-5 11 6
Pseudomonas mendocina ymp 7 4
Pseudomonas stutzeri A1501 5 3
Azotobacter vinelandii AvOP 7 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ntrB
*
Pseudomonas aeruginosa PAO1

Site:
position = -182
score = 5.42312
sequence = CGCACCAGATTGGTGCG

Gene: PA5124: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Pseudomonas entomophila L48

Site:
position = -71
score = 4.39086
sequence = AGCACGTTATCCGTGCG

Site:
position = -245
score = 5.47615
sequence = TGCTCCATATTGGTGCA

Gene: PSEEN0387: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Pseudomonas putida KT2440

Site:
position = -257
score = 4.67952
sequence = TGCTCTATCTTGGTGCA

Gene: PP5047: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -50
score = 4.16659
sequence = AGCACCAGCATTGCGCG

Site:
position = -267
score = 5.31449
sequence = AGCACCTTTTTGGTGCA

Gene: PSPTO0353: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Pseudomonas fluorescens Pf-5

Site:
position = -246
score = 5.43549
sequence = TGCACTATATTGGTGCA

Gene: PFL_0378: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Pseudomonas mendocina ymp

Site:
position = -256
score = 5.5799
sequence = CGCACCTTTATGGTGCA

Gene: Pmen_4143: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Pseudomonas stutzeri A1501

Site:
position = 1
score = 5.17203
sequence = TGCACCTGTTTGGTGCG

Gene: PST_0350: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Azotobacter vinelandii AvOP

Site:
position = -179
score = 4.18101
sequence = CGCCCTGTTTTGGGGCG

Gene: Avin_45890: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Pseudomonas aeruginosa PAO1

Gene: PA5125: Nitrogen regulation protein NR(I), Fis family
 
Pseudomonas entomophila L48

Gene: PSEEN0386: Nitrogen regulation protein NR(I), Fis family
 
Pseudomonas putida KT2440

Gene: PP5048: Nitrogen regulation protein NR(I), Fis family
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO0352: Nitrogen regulation protein NR(I), Fis family
 
Pseudomonas fluorescens Pf-5

Gene: PFL_0377: Nitrogen regulation protein NR(I), Fis family
 
Pseudomonas mendocina ymp

Gene: Pmen_4144: Nitrogen regulation protein NR(I), Fis family
 
Pseudomonas stutzeri A1501

Gene: PST_0349: Nitrogen regulation protein NR(I), Fis family
 
Azotobacter vinelandii AvOP

Gene: Avin_45900: Nitrogen regulation protein NR(I), Fis family
Nitrogen regulation protein NR(I), Fis family
 
CRON 2.
glnK
*
Pseudomonas aeruginosa PAO1

Site:
position = -338
score = 5.16879
sequence = TGCGCCTATTTGGTGCG

Gene: PA5288: Nitrogen regulatory protein P-II
*
Pseudomonas entomophila L48

Site:
position = -310
score = 5.34149
sequence = CGCACCGATTTTGTGCG

Gene: PSEEN5376: Nitrogen regulatory protein P-II
*
Pseudomonas putida KT2440

Site:
position = -299
score = 4.63899
sequence = TGCACATTTTTCGCGCA

Site:
position = -266
score = 5.35645
sequence = CGCACCGAAATTGTGCA

Gene: PP5234: Nitrogen regulatory protein P-II
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -315
score = 4.89031
sequence = AGCACCATTGTTGTGCA

Site:
position = -348
score = 4.57855
sequence = TGCACGCTTATGGCGCG

Gene: PSPTO0217: Nitrogen regulatory protein P-II
*
Pseudomonas fluorescens Pf-5

Site:
position = -347
score = 4.52647
sequence = TGCACGTTTTTCGCGCA

Site:
position = -314
score = 5.34882
sequence = CGCACCGTTTTTGTGCG

Gene: PFL_6020: Nitrogen regulatory protein P-II
*
Pseudomonas mendocina ymp

Site:
position = -341
score = 5.04392
sequence = TGCACAATTTTTGAGCA

Site:
position = -308
score = 5.6002
sequence = CGCACCAAATTTGTGCG

Gene: Pmen_0259: Nitrogen regulatory protein P-II
*
Pseudomonas stutzeri A1501

Site:
position = -329
score = 4.78521
sequence = TGCACAAAAAATGAGCA

Site:
position = -296
score = 5.49501
sequence = CGCACCATTTTCGTGCG

Gene: PST_0502: Nitrogen regulatory protein P-II
*
Azotobacter vinelandii AvOP

Site:
position = -296
score = 4.90766
sequence = CGCACGGTTTTCGTGCG

Gene: Avin_47790: Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II
amtB
 
Pseudomonas aeruginosa PAO1

Gene: PA5287: Ammonium transporter
 
Pseudomonas entomophila L48

Gene: PSEEN5375: Ammonium transporter
 
Pseudomonas putida KT2440

Gene: PP5233: Ammonium transporter
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO0218: Ammonium transporter
 
Pseudomonas fluorescens Pf-5

Gene: PFL_6019: Ammonium transporter
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_0503: Ammonium transporter
 
Azotobacter vinelandii AvOP

Gene: Avin_47780: Ammonium transporter
Ammonium transporter
 
CRON 3.
glnA
*
Pseudomonas aeruginosa PAO1

Site:
position = -207
score = 5.32182
sequence = AGCACCATAACGGTGCA

Site:
position = -220
score = 5.08295
sequence = TGCACCAACATGGAGCA

Gene: PA5119: Glutamine synthetase type I (EC 6.3.1.2)
*
Pseudomonas entomophila L48

Site:
position = -236
score = 5.83128
sequence = CGCACCAATATGGTGCA

Gene: PSEEN0390: Glutamine synthetase type I (EC 6.3.1.2)
*
Pseudomonas putida KT2440

Site:
position = -205
score = 4.44112
sequence = CGCATCGTAAGGGTGCA

Site:
position = -236
score = 5.28868
sequence = CGCACCCTATTGGTGCG

Gene: PP5046: Glutamine synthetase type I (EC 6.3.1.2)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -208
score = 4.91774
sequence = AGCGCCATAACGGTGCG

Gene: PSPTO0359: Glutamine synthetase type I (EC 6.3.1.2)
*
Pseudomonas fluorescens Pf-5

Site:
position = -235
score = 4.48614
sequence = TGCACCAAAACGGGTCA

Gene: PFL_0386: Glutamine synthetase type I (EC 6.3.1.2)
*
Pseudomonas mendocina ymp

Site:
position = -202
score = 4.42081
sequence = AGCCCTTAAATGGTGCA

Site:
position = -233
score = 4.06809
sequence = CGCACCAAAATAGGTCT

Gene: Pmen_4140: Glutamine synthetase type I (EC 6.3.1.2)
*
Pseudomonas stutzeri A1501

Site:
position = -212
score = 4.85481
sequence = CGCACCATTAACGCGCA

Site:
position = -243
score = 4.55771
sequence = CGCACCAAAACAATGCG

Gene: PST_0353: Glutamine synthetase type I (EC 6.3.1.2)
*
Azotobacter vinelandii AvOP

Site:
position = -100
score = 4.07032
sequence = TGCTCCCTTGTGGCGCG

Site:
position = -232
score = 4.13814
sequence = CGCACCAAAATGAAACA

Gene: Avin_45850: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
 
CRON 4.
ybdK
*
Pseudomonas aeruginosa PAO1

Site:
position = -118
score = 4.54729
sequence = TGCACCAGACTGGGGCG

Gene: PA1730: Carboxylate-amine ligase
 
Pseudomonas entomophila L48
*
Pseudomonas putida KT2440

Site:
position = -256
score = 4.06746
sequence = CGCCCTTTTTTGATGCG

Site:
position = -295
score = 4.47851
sequence = CGCCCCATTTCGGTTCA

Gene: PP2688: Carboxylate-amine ligase
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -119
score = 4.96325
sequence = TGCACAGGAATGGTGCG

Gene: PSPTO2059: Carboxylate-amine ligase
*2
Pseudomonas fluorescens Pf-5

Gene: PFL_1830: Carboxylate-amine ligase

Site:
position = -283
score = 4.4866
sequence = TGCACCGATTCTGTTCG

Gene: PFL_2518: Carboxylate-amine ligase
*
Pseudomonas mendocina ymp

Site:
position = -120
score = 5.17173
sequence = CGCACCGAGATGGTGCG

Gene: Pmen_2597: Carboxylate-amine ligase
 
Pseudomonas stutzeri A1501
*
Azotobacter vinelandii AvOP

Site:
position = -298
score = 4.56534
sequence = TGCATTTTTTTGGTGCG

Gene: Avin_37690: Carboxylate-amine ligase
Carboxylate-amine ligase
PF04168
 
Pseudomonas aeruginosa PAO1

Gene: PA1731: Conserved hypothetical protein
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440

Gene: PP2687: Conserved hypothetical protein
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2060: Conserved hypothetical protein
 2
Pseudomonas fluorescens Pf-5

Gene: PFL_1831: Conserved hypothetical protein

Gene: PFL_2519: Conserved hypothetical protein
 
Pseudomonas mendocina ymp

Gene: Pmen_2596: Conserved hypothetical protein
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP

Gene: Avin_37680: Conserved hypothetical protein
Conserved hypothetical protein
PF01841
 
Pseudomonas aeruginosa PAO1

Gene: PA1732: Transglutaminase-like protein
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440

Gene: PP2686: Transglutaminase-like protein
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2061: Transglutaminase-like protein
 2
Pseudomonas fluorescens Pf-5

Gene: PFL_1832: Transglutaminase-like protein

Gene: PFL_2520: Transglutaminase-like protein
 
Pseudomonas mendocina ymp

Gene: Pmen_2595: Transglutaminase-like protein
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Transglutaminase-like protein
 
CRON 5.
alsT
 
Pseudomonas aeruginosa PAO1

Gene: PA2252: Predicted alanin/sodium symporter
*
Pseudomonas entomophila L48

Site:
position = -133
score = 5.46852
sequence = CGCACCAAAATGGAGCA

Gene: PSEEN0571: Predicted alanin/sodium symporter
 
Pseudomonas putida KT2440

Gene: PP0496: Predicted alanin/sodium symporter
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -47
score = 4.77594
sequence = TGCACCGGTATAGTGCG

Gene: PSPTO5500: Predicted alanin/sodium symporter
*
Pseudomonas fluorescens Pf-5

Site:
position = -210
score = 4.76831
sequence = CGCACCGGTATAGTGCG

Gene: PFL_6139: Predicted alanin/sodium symporter
 
Pseudomonas mendocina ymp

Gene: Pmen_0135: Predicted alanin/sodium symporter
 
Pseudomonas stutzeri A1501

Gene: PST_0194: Predicted alanin/sodium symporter
 
Azotobacter vinelandii AvOP
Predicted alanin/sodium symporter
ansA
 
Pseudomonas aeruginosa PAO1

Gene: PA2253: L-asparaginase I (EC 3.5.1.1)
 
Pseudomonas entomophila L48

Gene: PSEEN0570: L-asparaginase I (EC 3.5.1.1)
 
Pseudomonas putida KT2440

Gene: PP0495: L-asparaginase I (EC 3.5.1.1)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO5501: L-asparaginase I (EC 3.5.1.1)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_6140: L-asparaginase I (EC 3.5.1.1)
 
Pseudomonas mendocina ymp

Gene: Pmen_0136: L-asparaginase I (EC 3.5.1.1)
 
Pseudomonas stutzeri A1501

Gene: PST_0193: L-asparaginase I (EC 3.5.1.1)
 
Azotobacter vinelandii AvOP

Gene: Avin_01180: L-asparaginase I (EC 3.5.1.1)
L-asparaginase I (EC 3.5.1.1)
 
CRON 6.
amtB2
 
Pseudomonas aeruginosa PAO1

Gene: PA3039: Ammonium transporter
*
Pseudomonas entomophila L48

Site:
position = -69
score = 4.7246
sequence = GGCACCGATTCGGTGCA

Gene: PSEEN3762: Ammonium transporter
*
Pseudomonas putida KT2440

Site:
position = -72
score = 4.7246
sequence = GGCACCGATTCGGTGCA

Gene: PP2106: Ammonium transporter
 
Pseudomonas syringae pv. tomato str. DC3000
*
Pseudomonas fluorescens Pf-5

Site:
position = -54
score = 4.57231
sequence = CGCGCCAAAACGGTTCA

Gene: PFL_4230: Ammonium transporter
 
Pseudomonas mendocina ymp

Gene: Pmen_2999: Ammonium transporter
 
Pseudomonas stutzeri A1501

Gene: PST_1589: Ammonium transporter
 
Azotobacter vinelandii AvOP
Ammonium transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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