Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c 5 3
Alteromonas macleodii 'Deep ecotype' 5 3
Glaciecola sp. HTCC2999 5 3
Colwellia psychrerythraea 34H 5 3
Alteromonadales bacterium TW-7 5 3
Pseudoalteromonas haloplanktis TAC125 5 3
Pseudoalteromonas tunicata D2 5 3
Idiomarina baltica OS145 3 2
Idiomarina loihiensis L2TR 5 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ntrB
*
Pseudoalteromonas atlantica T6c

Site:
position = -35
score = 5.60248
sequence = AGCACCAAAATGGTGCG

Gene: Patl_1027: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -33
score = 5.61038
sequence = TGCACAATAATGGTGCA

Gene: MADE_01589: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Glaciecola sp. HTCC2999

Site:
position = -28
score = 5.68549
sequence = CGCACCTTTTTGGTGCA

Gene: GHTCC_010100001115: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Colwellia psychrerythraea 34H

Site:
position = -42
score = 5.52651
sequence = CGCACCAAAACGGTGCA

Gene: CPS_0398: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Alteromonadales bacterium TW-7

Site:
position = -20
score = 5.59694
sequence = CGCACTAAAATGGTGCA

Gene: ATW7_15216: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -20
score = 5.59694
sequence = CGCACTAAAATGGTGCA

Gene: PSHAa0164: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Pseudoalteromonas tunicata D2

Site:
position = -20
score = 5.59694
sequence = CGCACTAAAATGGTGCA

Gene: PTD2_06404: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Idiomarina baltica OS145

Site:
position = -39
score = 5.78697
sequence = TGCACCAAATTAGTGCA

Gene: OS145_08983: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Idiomarina loihiensis L2TR

Site:
position = 14
score = 5.57458
sequence = TGCACCAACTTGGTGCG

Gene: IL2436: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1028: Nitrogen regulation protein NR(I), Fis family
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01588: Nitrogen regulation protein NR(I), Fis family
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100001120: Nitrogen regulation protein NR(I), Fis family
 
Colwellia psychrerythraea 34H

Gene: CPS_0397: Nitrogen regulation protein NR(I), Fis family
 
Alteromonadales bacterium TW-7

Gene: ATW7_15221: Nitrogen regulation protein NR(I), Fis family
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0163: Nitrogen regulation protein NR(I), Fis family
 
Pseudoalteromonas tunicata D2

Gene: PTD2_06399: Nitrogen regulation protein NR(I), Fis family
 
Idiomarina baltica OS145

Gene: OS145_08978: Nitrogen regulation protein NR(I), Fis family
 
Idiomarina loihiensis L2TR

Gene: IL2435: Nitrogen regulation protein NR(I), Fis family
Nitrogen regulation protein NR(I), Fis family
 
CRON 2.
glnK
*
Pseudoalteromonas atlantica T6c

Site:
position = -178
score = 4.90408
sequence = TGCGCTAATTCGGTGCA

Gene: Patl_0491: Nitrogen regulatory protein P-II
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -162
score = 5.33111
sequence = TGCACCATTGTTGTGCA

Gene: MADE_00479: Nitrogen regulatory protein P-II
*
Glaciecola sp. HTCC2999

Site:
position = -170
score = 5.11119
sequence = TGCACTTATTAAGTGCA

Gene: GHTCC_010100001884: Nitrogen regulatory protein P-II
*
Colwellia psychrerythraea 34H

Site:
position = -139
score = 4.39941
sequence = TGCACGCTCTTGGTGCG

Gene: CPS_0641: Nitrogen regulatory protein P-II
*
Alteromonadales bacterium TW-7

Site:
position = -141
score = 5.59714
sequence = CGCACCTAAATGGTGCG

Gene: ATW7_10498: Nitrogen regulatory protein P-II
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -139
score = 5.6988
sequence = CGCACCTAATTGGTGCG

Gene: PSHAa2258: Nitrogen regulatory protein P-II
*
Pseudoalteromonas tunicata D2

Site:
position = -142
score = 5.62368
sequence = TGCACAAATATGGTGCG

Gene: PTD2_12849: Nitrogen regulatory protein P-II
 
Idiomarina baltica OS145

Gene: OS145_04543: Nitrogen regulatory protein P-II
*
Idiomarina loihiensis L2TR

Site:
position = -124
score = 4.95228
sequence = CGCACGTTTTTTGTGCA

Gene: IL2164: Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II
amtB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0492: Ammonium transporter
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_00480: Ammonium transporter
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100001889: Ammonium transporter
 
Colwellia psychrerythraea 34H

Gene: CPS_0642: Ammonium transporter
 
Alteromonadales bacterium TW-7

Gene: ATW7_10493: Ammonium transporter
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2257: Ammonium transporter
 
Pseudoalteromonas tunicata D2

Gene: PTD2_12844: Ammonium transporter
 
Idiomarina baltica OS145

Gene: OS145_04548: Ammonium transporter
 
Idiomarina loihiensis L2TR

Gene: IL2165: Ammonium transporter
Ammonium transporter
 
CRON 3.
glnA
*
Pseudoalteromonas atlantica T6c

Site:
position = -191
score = 4.29478
sequence = TGCATGGTAATGGTGCG

Gene: Patl_1025: Glutamine synthetase type I (EC 6.3.1.2)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -162
score = 5.5163
sequence = TGCACATTTTTGGTGCA

Gene: MADE_01591: Glutamine synthetase type I (EC 6.3.1.2)
*
Glaciecola sp. HTCC2999

Site:
position = -196
score = 5.59676
sequence = TGCACCTATTTGGTGCT

Gene: GHTCC_010100001110: Glutamine synthetase type I (EC 6.3.1.2)
*
Colwellia psychrerythraea 34H

Site:
position = -203
score = 5.11416
sequence = AGCACCACTAAGGTGCA

Gene: CPS_0400: Glutamine synthetase type I (EC 6.3.1.2)
*
Alteromonadales bacterium TW-7

Site:
position = -151
score = 5.60248
sequence = CGCACCATATTGGTGCT

Gene: ATW7_15206: Glutamine synthetase type I (EC 6.3.1.2)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -150
score = 5.69121
sequence = CGCACCATAATGGTGCG

Gene: PSHAa0166: Glutamine synthetase type I (EC 6.3.1.2)
*
Pseudoalteromonas tunicata D2

Site:
position = -180
score = 5.45898
sequence = TGCACCAAATCTGTGCA

Gene: PTD2_06414: Glutamine synthetase type I (EC 6.3.1.2)
*
Idiomarina baltica OS145

Site:
position = -222
score = 5.5431
sequence = TGAACCAAATTGGTGCA

Gene: OS145_08988: Glutamine synthetase type I (EC 6.3.1.2)
*
Idiomarina loihiensis L2TR

Site:
position = -158
score = 5.72535
sequence = TGCACCAATTTTGTGCG

Gene: IL2437: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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