Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 29 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 4 3
Vibrio vulnificus CMCP6 5 3
Vibrio harveyi ATCC BAA-1116 5 3
Vibrio parahaemolyticus RIMD 2210633 6 4
Vibrio shilonii AK1 4 3
Vibrio splendidus LGP32 6 4
Vibrio fischeri ES114 5 3
Vibrio salmonicida LFI1238
Vibrio angustum S14 5 3
Photobacterium profundum SS9 5 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
amtB2
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV1_2598: Ammonium transporter
 
Vibrio harveyi ATCC BAA-1116
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -182
score = 5.3002
sequence = CGCATTATATTGGTGCA

Gene: VP1523: Ammonium transporter
*
Vibrio shilonii AK1

Site:
position = -238
score = 5.18672
sequence = TTCACTATATTGGTGCG

Gene: VSAK1_11520: Ammonium transporter
*
Vibrio splendidus LGP32

Site:
position = -138
score = 5.45835
sequence = CGCATCAATATGGTGCA

Gene: VS_1481: Ammonium transporter
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRB0379: Ammonium transporter
Ammonium transporter
 
CRON 2.
glnK
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -108
score = 5.39495
sequence = TGCACCGAATCGGTGCA

Gene: VC0606: Nitrogen regulatory protein P-II
*
Vibrio vulnificus CMCP6

Site:
position = -114
score = 5.82411
sequence = CGCACCATTATGGTGCG

Gene: VV1_1658: Nitrogen regulatory protein P-II
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -137
score = 5.51814
sequence = CGCACCGATATGGTGCG

Gene: VIBHAR_03437: Nitrogen regulatory protein P-II
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -137
score = 5.51814
sequence = CGCACCATATCGGTGCG

Gene: VP2493: Nitrogen regulatory protein P-II
 
Vibrio shilonii AK1
*
Vibrio splendidus LGP32

Site:
position = -143
score = 5.78427
sequence = CGCACCATATTGGTGCG

Gene: VS_2520: Nitrogen regulatory protein P-II
*
Vibrio fischeri ES114

Site:
position = -136
score = 5.55937
sequence = TGCACTATATTAGTGCG

Gene: VF_2153: Nitrogen regulatory protein P-II
 
Vibrio salmonicida LFI1238

Gene: VSAL_I2590: Nitrogen regulatory protein P-II
*
Vibrio angustum S14

Site:
position = -142
score = 5.36038
sequence = TGCACTGTGATGGTGCA

Gene: VAS14_20021: Nitrogen regulatory protein P-II
*
Photobacterium profundum SS9

Site:
position = -140
score = 5.45835
sequence = TGCATCATATTGGTGCG

Gene: PBPRA3186: Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II
amtB
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV1_1659: Ammonium transporter
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_03436: Ammonium transporter
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP2492: Ammonium transporter
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_2519: Ammonium transporter
 
Vibrio fischeri ES114

Gene: VF_2152: Ammonium transporter
 
Vibrio salmonicida LFI1238

Gene: VSAL_I2589: Ammonium transporter
 
Vibrio angustum S14

Gene: VAS14_20026: Ammonium transporter
 
Photobacterium profundum SS9

Gene: PBPRA3185: Ammonium transporter
Ammonium transporter
 
CRON 3.
glnA
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -222
score = 5.53511
sequence = CGCACCATGATAGTGCA

Gene: VC2746: Glutamine synthetase type I (EC 6.3.1.2)
*
Vibrio vulnificus CMCP6

Site:
position = -223
score = 5.4756
sequence = CGCACCATTAAGGTGCA

Gene: VV1_0889: Glutamine synthetase type I (EC 6.3.1.2)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -231
score = 5.58261
sequence = TGCACCATTACAGTGCA

Gene: VIBHAR_00588: Glutamine synthetase type I (EC 6.3.1.2)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -229
score = 5.27716
sequence = CGCACCACTTTAGTGCA

Gene: VP0121: Glutamine synthetase type I (EC 6.3.1.2)
*
Vibrio shilonii AK1

Site:
position = -225
score = 5.40885
sequence = TGCACCATAAAAGTGCA

Gene: VSAK1_12517: Glutamine synthetase type I (EC 6.3.1.2)
*
Vibrio splendidus LGP32

Site:
position = -219
score = 5.22452
sequence = TGCACCAATACCGTGCA

Gene: VS_0121: Glutamine synthetase type I (EC 6.3.1.2)
*
Vibrio fischeri ES114

Site:
position = -177
score = 5.58667
sequence = TGCACCAAGATAGTGCA

Gene: VF_0098: Glutamine synthetase type I (EC 6.3.1.2)
 
Vibrio salmonicida LFI1238

Gene: VSAL_I2940: Glutamine synthetase type I (EC 6.3.1.2)
*
Vibrio angustum S14

Site:
position = -202
score = 5.10242
sequence = TGCACCAAAGCAGTGCA

Gene: VAS14_22994: Glutamine synthetase type I (EC 6.3.1.2)
*
Photobacterium profundum SS9

Site:
position = -199
score = 5.13516
sequence = CGCACCATAATAGGGCG

Gene: PBPRA3492: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
 
CRON 4.
ntrB
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -50
score = 5.51338
sequence = TGCACCAATTTTGTGCA

Gene: VC2748: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Vibrio vulnificus CMCP6

Site:
position = -46
score = 5.54683
sequence = TGCACCAACTTAGTGCA

Gene: VV1_0891: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -85
score = 5.80891
sequence = TGCACCAATATAGTGCA

Gene: VIBHAR_00585: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -49
score = 5.59306
sequence = TGCACCATTATTGTGCA

Gene: VP0119: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Vibrio shilonii AK1

Site:
position = -123
score = 5.80891
sequence = TGCACCATTTTAGTGCA

Gene: VSAK1_12507: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Vibrio splendidus LGP32

Site:
position = -48
score = 5.83582
sequence = CGCACCAATTTGGTGCA

Gene: VS_0119: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Vibrio fischeri ES114

Site:
position = -37
score = 5.78465
sequence = TGCACCATGATGGTGCA

Gene: VF_0096: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Vibrio salmonicida LFI1238
*
Vibrio angustum S14

Site:
position = -70
score = 5.83582
sequence = TGCACCAATTTGGTGCG

Gene: VAS14_22979: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Photobacterium profundum SS9

Site:
position = -66
score = 5.87566
sequence = TGCACCAATATGGTGCG

Gene: PBPRA3494: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC2749: Nitrogen regulation protein NR(I), Fis family
 
Vibrio vulnificus CMCP6

Gene: VV1_0892: Nitrogen regulation protein NR(I), Fis family
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_00584: Nitrogen regulation protein NR(I), Fis family
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP0118: Nitrogen regulation protein NR(I), Fis family
 
Vibrio shilonii AK1

Gene: VSAK1_12502: Nitrogen regulation protein NR(I), Fis family
 
Vibrio splendidus LGP32

Gene: VS_0118: Nitrogen regulation protein NR(I), Fis family
 
Vibrio fischeri ES114

Gene: VF_0095: Nitrogen regulation protein NR(I), Fis family
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_22974: Nitrogen regulation protein NR(I), Fis family
 
Photobacterium profundum SS9

Gene: PBPRA3495: Nitrogen regulation protein NR(I), Fis family
Nitrogen regulation protein NR(I), Fis family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD