Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 28 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ralstonia solanacearum GMI1000 14 3
Ralstonia pickettii 12J 10 3
Ralstonia metallidurans CH34 15 5
Ralstonia eutropha JMP134 15 5
Ralstonia eutropha H16 10 4
Cupriavidus taiwanensis 10 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glnA
*2
Ralstonia solanacearum GMI1000

Site:
position = -334
score = 5.1269
sequence = CGCACTATGATGGTGCG

Gene: RSc1258: Glutamine synthetase type I (EC 6.3.1.2)

Gene: RSp0886: Glutamine synthetase type I (EC 6.3.1.2)
*
Ralstonia pickettii 12J

Site:
position = -346
score = 4.6835
sequence = TGCACCGTTTATGTGCG

Gene: Rpic_1086: Glutamine synthetase type I (EC 6.3.1.2)
*
Ralstonia metallidurans CH34

Site:
position = -297
score = 4.89463
sequence = CGCACCGTTATGGTGTT

Gene: Rmet_2062: Glutamine synthetase type I (EC 6.3.1.2)
*
Ralstonia eutropha JMP134

Site:
position = -319
score = 4.89463
sequence = CGCACCGTTATGGTGTT

Gene: Reut_A2057: Glutamine synthetase type I (EC 6.3.1.2)
*2
Ralstonia eutropha H16

Gene: H16_B0618: Glutamine synthetase type I (EC 6.3.1.2)

Site:
position = -295
score = 4.68597
sequence = TGCACCATTGTGGTGTT

Gene: H16_A2335: Glutamine synthetase type I (EC 6.3.1.2)
*
Cupriavidus taiwanensis

Site:
position = -334
score = 4.804
sequence = CGCACTAATGCGGTGCG

Site:
position = -304
score = 4.71001
sequence = TGCACCATGATGGTGTT

Gene: RALTA_A1880: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
ntrZ
 
Ralstonia solanacearum GMI1000

Gene: RS02776: Conserved hypothetical signal peptide protein
 
Ralstonia pickettii 12J

Gene: Rpic_1087: Conserved hypothetical signal peptide protein
*
Ralstonia metallidurans CH34

Site:
position = -193
score = 4.3847
sequence = TGCACCAGGAAGGGGCG

Gene: Rmet_2061: Conserved hypothetical signal peptide protein
*
Ralstonia eutropha JMP134

Site:
position = -80
score = 4.6073
sequence = AGCACCATCAAGGGGCG

Gene: Reut_A2056: Conserved hypothetical signal peptide protein
*
Ralstonia eutropha H16

Site:
position = -95
score = 4.66625
sequence = TGCACCAGAAAGGGGCG

Gene: H16_A2334: Conserved hypothetical signal peptide protein
*
Cupriavidus taiwanensis

Site:
position = -190
score = 4.46856
sequence = TGCACCACAAGGGGGCG

Gene: RALTA_A1879: Conserved hypothetical signal peptide protein
Conserved hypothetical signal peptide protein
ntrB
 
Ralstonia solanacearum GMI1000

Gene: RSc1260: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Ralstonia pickettii 12J

Gene: Rpic_1088: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Ralstonia metallidurans CH34

Gene: Rmet_2060: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Ralstonia eutropha JMP134

Gene: Reut_A2055: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Ralstonia eutropha H16

Gene: H16_A2333: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Cupriavidus taiwanensis

Gene: RALTA_A1878: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Ralstonia solanacearum GMI1000

Gene: RSc1261: Nitrogen regulation protein NR(I), Fis family
 
Ralstonia pickettii 12J

Gene: Rpic_1089: Nitrogen regulation protein NR(I), Fis family
 
Ralstonia metallidurans CH34

Gene: Rmet_2059: Nitrogen regulation protein NR(I), Fis family
 
Ralstonia eutropha JMP134

Gene: Reut_A2054: Nitrogen regulation protein NR(I), Fis family
 
Ralstonia eutropha H16

Gene: H16_A2332: Nitrogen regulation protein NR(I), Fis family
 
Cupriavidus taiwanensis

Gene: RALTA_A1877: Nitrogen regulation protein NR(I), Fis family
Nitrogen regulation protein NR(I), Fis family
 
CRON 2.
amtB
 
Ralstonia solanacearum GMI1000
*
Ralstonia pickettii 12J

Site:
position = -137
score = 4.87956
sequence = CGCACGACCATGGTGCG

Gene: Rpic_0087: Ammonium transporter
*
Ralstonia metallidurans CH34

Site:
position = -185
score = 4.51151
sequence = TGCGCCATCACGGCGCA

Gene: Rmet_4750: Ammonium transporter
*
Ralstonia eutropha JMP134

Site:
position = -91
score = 4.61348
sequence = TCCACCATGAAGGTGCA

Site:
position = -232
score = 4.65733
sequence = TGCACCACTAAGGTTCA

Gene: Reut_B4038: Ammonium transporter
*
Ralstonia eutropha H16

Site:
position = -188
score = 4.93537
sequence = CGCGCCATTTTGGCGCA

Site:
position = -221
score = 5.12771
sequence = CGCACCATAACGGTTCA

Gene: H16_B1234: Ammonium transporter
*
Cupriavidus taiwanensis

Site:
position = -187
score = 4.93537
sequence = CGCGCCATTTTGGCGCA

Gene: RALTA_B1139: Ammonium transporter
Ammonium transporter
 
CRON 3.
narK
*
Ralstonia solanacearum GMI1000

Site:
position = -258
score = 4.82358
sequence = TGCACCGAAACCGTGCA

Gene: RS03167: Nitrate/nitrite antiporter
*
Ralstonia pickettii 12J

Site:
position = -272
score = 4.4036
sequence = TGCACCGAAAGCGTGCG

Gene: Rpic_4163: Nitrate/nitrite antiporter
*
Ralstonia metallidurans CH34

Site:
position = -284
score = 4.98174
sequence = CGCACCATTGCCGTGCG

Gene: Rmet_4817: Nitrate/nitrite antiporter
*
Ralstonia eutropha JMP134

Site:
position = -271
score = 4.19835
sequence = CGCACCATGACTGTGCC

Gene: Reut_B4859: Nitrate/nitrite antiporter
 
Ralstonia eutropha H16

Gene: H16_B0780: Nitrate/nitrite antiporter
 
Cupriavidus taiwanensis

Gene: RALTA_B0614: Nitrate/nitrite antiporter
Nitrate/nitrite antiporter
nasD
 
Ralstonia solanacearum GMI1000

Gene: RSp1222: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Ralstonia pickettii 12J

Gene: Rpic_4164: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Ralstonia metallidurans CH34

Gene: Rmet_4818: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Ralstonia eutropha JMP134

Gene: Reut_B4860: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Ralstonia eutropha H16

Gene: H16_B0779: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Cupriavidus taiwanensis

Gene: RALTA_B0613: Nitrite reductase, large subunit (EC 1.7.1.4)
Nitrite reductase, large subunit (EC 1.7.1.4)
nasE
 
Ralstonia solanacearum GMI1000

Gene: RSp1221: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Ralstonia pickettii 12J

Gene: Rpic_4165: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Ralstonia metallidurans CH34

Gene: Rmet_4819: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Ralstonia eutropha JMP134

Gene: Reut_B4861: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Ralstonia eutropha H16

Gene: H16_B0778: Nitrite reductase, small subunit (EC 1.7.1.4)
 
Cupriavidus taiwanensis

Gene: RALTA_B0612: Nitrite reductase, small subunit (EC 1.7.1.4)
Nitrite reductase, small subunit (EC 1.7.1.4)
nasB
 
Ralstonia solanacearum GMI1000

Gene: RS03164: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
 
Ralstonia pickettii 12J

Gene: Rpic_4166: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
 
Ralstonia metallidurans CH34

Gene: Rmet_4820: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
 
Ralstonia eutropha JMP134

Gene: Reut_B4862: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
 
Ralstonia eutropha H16

Gene: H16_B0777: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
 
Cupriavidus taiwanensis

Gene: RALTA_B0611: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
nasA
 
Ralstonia solanacearum GMI1000

Gene: RSp1219: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Ralstonia pickettii 12J

Gene: Rpic_4167: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Ralstonia metallidurans CH34

Gene: Rmet_4821: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Ralstonia eutropha JMP134

Gene: Reut_B4863: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Ralstonia eutropha H16

Gene: H16_B0776: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Cupriavidus taiwanensis

Gene: RALTA_B0610: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
CRON 4.
dppA
*
Ralstonia solanacearum GMI1000

Site:
position = -193
score = 4.59913
sequence = TGCACCAATTTGTGGCG

Gene: RSc2870: Dipeptide ABC transporter, substrate-binding component
 
Ralstonia pickettii 12J
*
Ralstonia metallidurans CH34

Site:
position = -91
score = 4.27397
sequence = CGCACCAAAATGCGGCC

Site:
position = -218
score = 4.49333
sequence = CGCAGCATTGCGGGGCA

Gene: Rmet_3158: Dipeptide ABC transporter, substrate-binding component
*
Ralstonia eutropha JMP134

Site:
position = -93
score = 4.896
sequence = CGCACCAAAATGCAGCG

Gene: Reut_A3006: Dipeptide ABC transporter, substrate-binding component
*
Ralstonia eutropha H16

Site:
position = -93
score = 4.71663
sequence = CGCACCAAAACGCAGCG

Gene: H16_A3298: Dipeptide ABC transporter, substrate-binding component
*
Cupriavidus taiwanensis

Site:
position = -93
score = 4.63427
sequence = CGCACCAAAAAGCAGCG

Gene: RALTA_A2753: Dipeptide ABC transporter, substrate-binding component
Dipeptide ABC transporter, substrate-binding component
dppB
 
Ralstonia solanacearum GMI1000

Gene: RSc2869: Dipeptide ABC transporter, permease component 1
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_3157: Dipeptide ABC transporter, permease component 1
 
Ralstonia eutropha JMP134

Gene: Reut_A3005: Dipeptide ABC transporter, permease component 1
 
Ralstonia eutropha H16

Gene: H16_A3297: Dipeptide ABC transporter, permease component 1
 
Cupriavidus taiwanensis

Gene: RALTA_A2752: Dipeptide ABC transporter, permease component 1
Dipeptide ABC transporter, permease component 1
dppC
 
Ralstonia solanacearum GMI1000

Gene: RSc2868: Dipeptide ABC transporter, permease component 2
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_3156: Dipeptide ABC transporter, permease component 2
 
Ralstonia eutropha JMP134

Gene: Reut_A3004: Dipeptide ABC transporter, permease component 2
 
Ralstonia eutropha H16

Gene: H16_A3296: Dipeptide ABC transporter, permease component 2
 
Cupriavidus taiwanensis

Gene: RALTA_A2751: Dipeptide ABC transporter, permease component 2
Dipeptide ABC transporter, permease component 2
dppD
 
Ralstonia solanacearum GMI1000

Gene: RSc2867: Dipeptide ABC transporter, ATP-binding component 1
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_3155: Dipeptide ABC transporter, ATP-binding component 1
 
Ralstonia eutropha JMP134

Gene: Reut_A3003: Dipeptide ABC transporter, ATP-binding component 1
 
Ralstonia eutropha H16

Gene: H16_A3295: Dipeptide ABC transporter, ATP-binding component 1
 
Cupriavidus taiwanensis

Gene: RALTA_A2750: Dipeptide ABC transporter, ATP-binding component 1
Dipeptide ABC transporter, ATP-binding component 1
dppF
 
Ralstonia solanacearum GMI1000

Gene: RSc2866: Dipeptide ABC transporter, ATP-binding component 2
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_3154: Dipeptide ABC transporter, ATP-binding component 2
 
Ralstonia eutropha JMP134

Gene: Reut_A3002: Dipeptide ABC transporter, ATP-binding component 2
 
Ralstonia eutropha H16

Gene: H16_A3294: Dipeptide ABC transporter, ATP-binding component 2
 
Cupriavidus taiwanensis

Gene: RALTA_A2749: Dipeptide ABC transporter, ATP-binding component 2
Dipeptide ABC transporter, ATP-binding component 2
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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