Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GlcC - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Glycolate utilization
Effector: Glycolate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 21 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243
Burkholderia mallei ATCC 23344
Burkholderia sp. 383 6 2
Burkholderia cepacia AMMD 6 2
Burkholderia vietnamiensis G4
Burkholderia glumae BGR1
Burkholderia xenovorans LB400 6 2
Burkholderia phymatum STM815 10 5
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glcC
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -121
score = 5.56425
sequence = TGTGGTCATACCAGT

Site:
position = -15
score = 5.9215
sequence = AGTGGTCATACCAGT

Gene: Bcep18194_B0034: Glycolate utilization operon transcriptional activator GlcC
*
Burkholderia cepacia AMMD

Site:
position = -121
score = 5.62812
sequence = CGTGGTCGTACCAGT

Site:
position = -15
score = 5.9215
sequence = AGTGGTCATACCAGT

Gene: Bamb_4937: Glycolate utilization operon transcriptional activator GlcC
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
*
Burkholderia xenovorans LB400

Site:
position = -136
score = 5.77481
sequence = AGTGGTCGTACCAGT

Site:
position = -27
score = 5.77481
sequence = AGTGGTCGTACCAGT

Gene: Bxe_A2218: Glycolate utilization operon transcriptional activator GlcC
*2
Burkholderia phymatum STM815

Site:
position = -120
score = 5.77481
sequence = AGTGGTCGTACCAGT

Site:
position = -13
score = 5.9215
sequence = AGTGGTCATACCAGT

Gene: Bphy_7453: Glycolate utilization operon transcriptional activator GlcC

Site:
position = -109
score = 5.65649
sequence = AGTGGTAATACCAGT

Site:
position = -1
score = 5.9215
sequence = AGTGGTCATACCAGT

Gene: Bphy_5644: Glycolate utilization operon transcriptional activator GlcC
Glycolate utilization operon transcriptional activator GlcC
 
CRON 2.
glcD
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
*
Burkholderia sp. 383

Site:
position = -219
score = 4.58812
sequence = ACTGGTATGACCACT

Site:
position = -113
score = 3.95172
sequence = ACTGGTATGACCACA

Gene: Bcep18194_B0033: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
*
Burkholderia cepacia AMMD

Site:
position = -117
score = 4.60133
sequence = ACTGGTACGACCACG

Site:
position = -223
score = 4.58812
sequence = ACTGGTATGACCACT

Gene: Bamb_4938: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
*
Burkholderia xenovorans LB400

Site:
position = -146
score = 4.94536
sequence = ACTGGTACGACCACT

Site:
position = -255
score = 4.94536
sequence = ACTGGTACGACCACT

Gene: Bxe_A2219: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
*2
Burkholderia phymatum STM815

Site:
position = -234
score = 4.58812
sequence = ACTGGTATGACCACT

Site:
position = -126
score = 4.78903
sequence = ACTGGTATTACCACT

Gene: Bphy_5643: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD

Site:
position = -113
score = 4.94536
sequence = ACTGGTACGACCACT

Site:
position = -220
score = 4.58812
sequence = ACTGGTATGACCACT

Gene: Bphy_7454: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcE
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383

Gene: Bcep18194_B0032: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Burkholderia cepacia AMMD

Gene: Bamb_4939: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400

Gene: Bxe_A2220: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 2
Burkholderia phymatum STM815

Gene: Bphy_5642: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE

Gene: Bphy_7455: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
glcF
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383

Gene: Bcep18194_B0031: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Burkholderia cepacia AMMD

Gene: Bamb_4940: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400

Gene: Bxe_A2221: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 2
Burkholderia phymatum STM815

Gene: Bphy_5641: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF

Gene: Bphy_7456: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
glcG
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383

Gene: Bcep18194_B0030: Hypothetical protein GlcG in glycolate utilization operon
 
Burkholderia cepacia AMMD

Gene: Bamb_4941: Hypothetical protein GlcG in glycolate utilization operon
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400

Gene: Bxe_A2222: Hypothetical protein GlcG in glycolate utilization operon
*
Burkholderia phymatum STM815

Site:
position = -188
score = 4.90278
sequence = ACTGGTATGACCAGT

Gene: Bphy_6609: Hypothetical protein GlcG in glycolate utilization operon
Hypothetical protein GlcG in glycolate utilization operon
glcB
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383

Gene: Bcep18194_B0029: Malate synthase G (EC 2.3.3.9)
 
Burkholderia cepacia AMMD

Gene: Bamb_4942: Malate synthase G (EC 2.3.3.9)
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400

Gene: Bxe_A2223: Malate synthase G (EC 2.3.3.9)
 
Burkholderia phymatum STM815

Gene: Bphy_6610: Malate synthase G (EC 2.3.3.9)
Malate synthase G (EC 2.3.3.9)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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