Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GlcC - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor (activator)
Biological process: Glycolate utilization
Effector: Glycolate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396
Marinobacter aqueolei 5 2
Marinobacter sp. ELB17 8 2
Oceanobacter sp. RED65
Oceanospirillum sp. MED92 4 2
Marinomonas sp. MWYL1
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297
Alcanivorax borkumensis SK2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lldE
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
*
Oceanospirillum sp. MED92

Site:
position = -154
score = 4.95289
sequence = TCTTGGTCAGACCAGTT

Gene: MED92_02414: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
lldF
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92

Gene: MED92_02409: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
lldG
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92

Gene: MED92_02404: L-lactate dehydrogenase, subunit LldG
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
L-lactate dehydrogenase, subunit LldG
 
CRON 2.
glcP
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
*
Marinobacter sp. ELB17

Site:
position = -165
score = 5.59504
sequence = AACTGGTCTGACCAGCA

Site:
position = -260
score = 5.75693
sequence = AACTGGTCAGACCAGCT

Gene: MELB17_21740: Predicted TRAP-type glycolate transport system, periplasmic component
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Predicted TRAP-type glycolate transport system, periplasmic component
glcQ
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17

Gene: MELB17_21745: Predicted TRAP-type glycolate transport system, small permease component
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Predicted TRAP-type glycolate transport system, small permease component
glcM
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17

Gene: MELB17_21750: Predicted TRAP-type glycolate transport system, large permease component
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Predicted TRAP-type glycolate transport system, large permease component
glcG
 
Hahella chejuensis KCTC 2396
*
Marinobacter aqueolei

Site:
position = -215
score = 5.59504
sequence = TGCTGGTCTGACCAGTT

Site:
position = -100
score = 5.99292
sequence = AACTGGTCGGACCAGTA

Gene: Maqu_3305: Hypothetical protein GlcG in glycolate utilization operon
 
Marinobacter sp. ELB17

Gene: MELB17_21755: Hypothetical protein GlcG in glycolate utilization operon
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2690: Hypothetical protein GlcG in glycolate utilization operon
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Hypothetical protein GlcG in glycolate utilization operon
glcD
 
Hahella chejuensis KCTC 2396

Gene: HCH_05806: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Marinobacter aqueolei

Gene: Maqu_3304: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Marinobacter sp. ELB17

Gene: MELB17_21760: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2687: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcE
 
Hahella chejuensis KCTC 2396

Gene: HCH_05805: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Marinobacter aqueolei

Gene: Maqu_3303: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Marinobacter sp. ELB17

Gene: MELB17_21765: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2688: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
glcF
 
Hahella chejuensis KCTC 2396

Gene: HCH_05804: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Marinobacter aqueolei

Gene: Maqu_3302: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Marinobacter sp. ELB17

Gene: MELB17_21770: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2689: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
CRON 3.
glcC
 
Hahella chejuensis KCTC 2396
*
Marinobacter aqueolei

Site:
position = -140
score = 5.99292
sequence = TACTGGTCCGACCAGTT

Site:
position = -25
score = 5.59504
sequence = AACTGGTCAGACCAGCA

Gene: Maqu_3306: Glycolate utilization operon transcriptional activator GlcC
*
Marinobacter sp. ELB17

Site:
position = -89
score = 5.59504
sequence = TGCTGGTCAGACCAGTT

Site:
position = 6
score = 5.75693
sequence = AGCTGGTCTGACCAGTT

Gene: MELB17_21735: Glycolate utilization operon transcriptional activator GlcC
 
Oceanobacter sp. RED65
*
Oceanospirillum sp. MED92

Site:
position = -43
score = 4.95289
sequence = AACTGGTCTGACCAAGA

Gene: MED92_02419: Glycolate utilization operon transcriptional activator GlcC
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Glycolate utilization operon transcriptional activator GlcC
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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