Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog SiaR - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor
Biological process: Sialic acid utilization
Effector: Glucosamine-6-phosphate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio vulnificus CMCP6
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633
Vibrio shilonii AK1
Vibrio splendidus LGP32
Vibrio fischeri ES114 8 5
Vibrio salmonicida LFI1238 2 2
Vibrio angustum S14
Photobacterium profundum SS9 9 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ptsG2
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
*
Vibrio fischeri ES114

Site:
position = -88
score = 5.59623
sequence = TTTGGAGTATAACTTCATA

Site:
position = -116
score = 4.87584
sequence = CTTGAAGTTAAACTCCGTA

Gene: VF_A0786: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
 
CRON 2.
nanE
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6

Gene: VV20734: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1

Gene: VSAK1_18292: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
 
Vibrio splendidus LGP32
*
Vibrio fischeri ES114

Site:
position = -43
score = 5.14468
sequence = ATTGAAGTATTACTCCGTT

Site:
position = -195
score = 4.87727
sequence = ATTGGAGTTACACTCCGAA

Gene: VF_0666: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -78
score = 5.47587
sequence = GGTGGAGTTAAACTTCATT

Site:
position = -105
score = 5.16663
sequence = GTTGAAGTAAAACTTCATC

Site:
position = -226
score = 4.98094
sequence = TATGGAGTTAGGCTCCATT

Gene: PBPRA2285: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
nanK
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_0667: N-acetylmannosamine kinase (EC 2.7.1.60)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRA2284: N-acetylmannosamine kinase (EC 2.7.1.60)
N-acetylmannosamine kinase (EC 2.7.1.60)
nanT
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_0668: Sialic acid transporter (permease) NanT
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRA2283: Sialic acid transporter (permease) NanT
Sialic acid transporter (permease) NanT
yhcH
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114

Gene: VF_0669: Uncharacterized protein yhcH
 
Vibrio salmonicida LFI1238

Gene: VSAL_I0893: Uncharacterized protein yhcH
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRA2282: Uncharacterized protein yhcH
Uncharacterized protein yhcH
 
CRON 3.
siaR
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
*
Vibrio fischeri ES114

Site:
position = -80
score = 5.29534
sequence = TATGGAGTTACACTTCACA

Gene: VF_0664: Sialic acid utilization regulator, RpiR family
*
Vibrio salmonicida LFI1238

Site:
position = -80
score = 4.44258
sequence = CACGGAGTTACACTTCACA

Gene: VSAL_I0898: Sialic acid utilization regulator, RpiR family
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -83
score = 5.30998
sequence = TATGGAGTTTAGCTTCACA

Gene: PBPRA2286: Sialic acid utilization regulator, RpiR family
Sialic acid utilization regulator, RpiR family
 
CRON 4.
nanA
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
*
Vibrio fischeri ES114

Site:
position = -42
score = 5.41824
sequence = AATGAAGAATAACTTCATT

Site:
position = -91
score = 5.03059
sequence = AATGAAACTTTACTCCATA

Gene: VF_0663: N-acetylneuraminate lyase (EC 4.1.3.3)
*
Vibrio salmonicida LFI1238

Site:
position = -41
score = 4.68105
sequence = AATGAAGAATGACTTCAAA

Site:
position = -90
score = 5.03059
sequence = AATGAAACTTTACTCCATA

Gene: VSAL_I0899: N-acetylneuraminate lyase (EC 4.1.3.3)
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -38
score = 5.10893
sequence = TGTGAAGTTTAACTTCGCT

Gene: PBPRA2287: N-acetylneuraminate lyase (EC 4.1.3.3)
N-acetylneuraminate lyase (EC 4.1.3.3)
 
CRON 5.
nagA2
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio vulnificus CMCP6
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
*
Vibrio fischeri ES114

Site:
position = -51
score = 4.87727
sequence = TTCGGAGTGTAACTCCAAT

Gene: VF_0665: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14

Gene: VAS14_11739: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Photobacterium profundum SS9

Gene: PBPRB0765: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
CRON 6.
siaP
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1779: Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
 
Vibrio vulnificus CMCP6

Gene: VV20733: Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1

Gene: VSAK1_18299: Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
*
Photobacterium profundum SS9

Site:
position = -118
score = 4.75148
sequence = TTTGAAGAAAACCTTCATA

Gene: PBPRA2281: Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
siaS
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1778: TRAP-type transport system, small permease component, N-acetylneuraminate transporter
 
Vibrio vulnificus CMCP6

Gene: VV20732: TRAP-type transport system, small permease component, N-acetylneuraminate transporter
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1

Gene: VSAK1_18304: TRAP-type transport system, small permease component, N-acetylneuraminate transporter
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRA2280: TRAP-type transport system, small permease component, N-acetylneuraminate transporter
TRAP-type transport system, small permease component, N-acetylneuraminate transporter
siaT
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1777: TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter
 
Vibrio vulnificus CMCP6

Gene: VV20731: TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio shilonii AK1

Gene: VSAK1_18309: TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter
 
Vibrio splendidus LGP32
 
Vibrio fischeri ES114
 
Vibrio salmonicida LFI1238
 
Vibrio angustum S14
 
Photobacterium profundum SS9

Gene: PBPRA2279: TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter
TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD