Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NagQ - Rhodobacterales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1
Paracoccus denitrificans PD1222 9 2
Jannaschia sp. CCS1 9 2
Rhodobacterales bacterium HTCC2654
Oceanicola granulosus HTCC2516
Loktanella vestfoldensis SKA53
Oceanicola batsensis HTCC2597
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Sulfitobacter sp. EE-36
Silicibacter TM1040 10 2
Silicibacter pomeroyi DSS-3 10 2
Roseobacter sp. MED193
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
murQ
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -132
score = -1.99069
sequence = GATACCAAAACAATACCA

Gene: Pden_2473: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
*
Jannaschia sp. CCS1

Site:
position = -146
score = -1.57944
sequence = AAAGCCAATACAATACCA

Gene: Jann_1357: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -211
score = -1.75932
sequence = AATACCATTACGATACCA

Gene: TM1040_3152: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
*
Silicibacter pomeroyi DSS-3

Site:
position = -156
score = 0.173122
sequence = AATACCTTTATAATACCT

Gene: SPO1840: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
nagT
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2472: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein
 
Jannaschia sp. CCS1

Gene: Jann_1356: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3153: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein
 
Silicibacter pomeroyi DSS-3

Gene: SPO1839: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein
nagU
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2471: N-Acetyl-D-glucosamine ABC transport system, permease protein 1
 
Jannaschia sp. CCS1

Gene: Jann_1355: N-Acetyl-D-glucosamine ABC transport system, permease protein 1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516

Gene: OG2516_18735: N-Acetyl-D-glucosamine ABC transport system, permease protein 1
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3154: N-Acetyl-D-glucosamine ABC transport system, permease protein 1
 
Silicibacter pomeroyi DSS-3

Gene: SPO1838: N-Acetyl-D-glucosamine ABC transport system, permease protein 1
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
N-Acetyl-D-glucosamine ABC transport system, permease protein 1
nagV
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2470: N-Acetyl-D-glucosamine ABC transport system, permease protein 2
 
Jannaschia sp. CCS1

Gene: Jann_1354: N-Acetyl-D-glucosamine ABC transport system, permease protein 2
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3155: N-Acetyl-D-glucosamine ABC transport system, permease protein 2
 
Silicibacter pomeroyi DSS-3

Gene: SPO1837: N-Acetyl-D-glucosamine ABC transport system, permease protein 2
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
N-Acetyl-D-glucosamine ABC transport system, permease protein 2
nagD
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2957: Hypothetical oxidoreductase related to N-acetylglucosamine utilization
 
Jannaschia sp. CCS1

Gene: Jann_1469: Hypothetical oxidoreductase related to N-acetylglucosamine utilization
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516

Gene: OG2516_04968: Hypothetical oxidoreductase related to N-acetylglucosamine utilization
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3156: Hypothetical oxidoreductase related to N-acetylglucosamine utilization
 
Silicibacter pomeroyi DSS-3

Gene: SPO1836: Hypothetical oxidoreductase related to N-acetylglucosamine utilization
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Hypothetical oxidoreductase related to N-acetylglucosamine utilization
nagW
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2469: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein
 
Jannaschia sp. CCS1

Gene: Jann_1353: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3157: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein
 
Silicibacter pomeroyi DSS-3

Gene: SPO1835: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
N-Acetyl-D-glucosamine ABC transport system ATP-binding protein
 
CRON 2.
nagK
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -38
score = 6.2813
sequence = TGGTATTGTTTTGGTATC

Gene: Pden_2474: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Jannaschia sp. CCS1

Site:
position = -100
score = 0.12517
sequence = GATACCTTTTTAATACCT

Gene: Jann_1358: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_09235: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Silicibacter TM1040

Site:
position = -21
score = 5.71379
sequence = TGGTATCGTAATGGTATT

Gene: TM1040_3151: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
*
Silicibacter pomeroyi DSS-3

Site:
position = -21
score = 5.41132
sequence = AGGTATTATAAAGGTATT

Gene: SPO1841: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
 
Roseobacter sp. MED193

Gene: MED193_17289: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
nagQ
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2475: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
 
Jannaschia sp. CCS1

Gene: Jann_1359: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516

Gene: OG2516_15399: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3150: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
 
Silicibacter pomeroyi DSS-3

Gene: SPO1842: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
nagB2
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2476: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Jannaschia sp. CCS1

Gene: Jann_1360: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3149: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Silicibacter pomeroyi DSS-3

Gene: SPO1843: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
nagA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_1296: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Paracoccus denitrificans PD1222

Gene: Pden_2477: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Jannaschia sp. CCS1

Gene: Jann_1361: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_09230: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Silicibacter TM1040

Gene: TM1040_3148: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Silicibacter pomeroyi DSS-3

Gene: SPO1844: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Roseobacter sp. MED193

Gene: MED193_17284: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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