Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HypR - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396 5 3
Marinobacter aqueolei
Marinobacter sp. ELB17
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043 4 3
Reinekea sp. MED297
Alcanivorax borkumensis SK2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hypO
*
Hahella chejuensis KCTC 2396

Site:
position = -42
score = 4.94466
sequence = ATTTTATACAAT

Gene: HCH_03166: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
*
Chromohalobacter salexigens DSM 3043

Site:
position = -49
score = 4.94466
sequence = ATTTTATACAAT

Gene: Csal_2708: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
CRON 2.
hypE
*
Hahella chejuensis KCTC 2396

Site:
position = -129
score = 4.94466
sequence = ATTGTATAAAAT

Gene: HCH_03167: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
*
Chromohalobacter salexigens DSM 3043

Site:
position = -45
score = 4.94466
sequence = ATTGTATAAAAT

Gene: Csal_2705: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
hypD
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2706: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
hypR
 
Hahella chejuensis KCTC 2396

Gene: HCH_03168: Predicted regulator for proline and hydrohyproline utilization, GntR family
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
*
Chromohalobacter salexigens DSM 3043

Site:
position = -44
score = 4.0189
sequence = GTTGTATACAGT

Gene: Csal_2707: Predicted regulator for proline and hydrohyproline utilization, GntR family
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Predicted regulator for proline and hydrohyproline utilization, GntR family
 
CRON 3.
hypD-related, COG329 (DapA)
*
Hahella chejuensis KCTC 2396

Site:
position = -118
score = 5.32149
sequence = ATTGTATACAAT

Gene: HCH_03163: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
hypH-related, COG1012 (PutA)
 
Hahella chejuensis KCTC 2396

Gene: HCH_03162: Aldehyde dehydrogenase (EC 1.2.1.3), possibly ketoglutarate semialdehyde dehydrogenase
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Aldehyde dehydrogenase (EC 1.2.1.3), possibly ketoglutarate semialdehyde dehydrogenase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD