Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HypR - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 21 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c
Alteromonas macleodii 'Deep ecotype'
Glaciecola sp. HTCC2999
Colwellia psychrerythraea 34H 6 5
Alteromonadales bacterium TW-7 8 6
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2 9 6
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
omp, COG1629 (CirA)
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -162
score = 4.16637
sequence = ATAATATACAAT

Gene: CPS_4791: TonB-dependent receptor, collagen-binding surface protein
*
Alteromonadales bacterium TW-7

Site:
position = -86
score = 5.32149
sequence = ATTGTATACAAT

Gene: ATW7_13093: TonB-dependent receptor, collagen-binding surface protein
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -54
score = 5.32149
sequence = ATTGTATACAAT

Gene: PTD2_02396: TonB-dependent receptor, collagen-binding surface protein
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
TonB-dependent receptor, collagen-binding surface protein
 
CRON 2.
ATW7_13133
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
*
Alteromonadales bacterium TW-7

Site:
position = -36
score = 5.32149
sequence = ATTGTATACAAT

Gene: ATW7_13133: hypothetical protein
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
hypothetical protein
 
CRON 3.
hypD
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -100
score = 5.32149
sequence = ATTGTATACAAT

Gene: CPS_1449: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
*
Alteromonadales bacterium TW-7

Site:
position = -45
score = 4.7364
sequence = ACTGTATACAAT

Gene: ATW7_13098: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -65
score = 5.01168
sequence = ATTGCATACAAT

Gene: PTD2_14397: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
hypE
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1450: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
*
Alteromonadales bacterium TW-7

Site:
position = -276
score = 5.32149
sequence = ATTGTATACAAT

Gene: ATW7_13113: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2

Gene: PTD2_14402: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
hypH
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1451: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
 
Alteromonadales bacterium TW-7

Gene: ATW7_13108: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2

Gene: PTD2_14407: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
hypR
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = 6
score = 4.03261
sequence = ATAGTATATAAA

Gene: CPS_4142: Predicted regulator for proline and hydrohyproline utilization, GntR family
*
Alteromonadales bacterium TW-7

Site:
position = -33
score = 3.89307
sequence = AATGTATGCTAA

Gene: ATW7_13103: Predicted regulator for proline and hydrohyproline utilization, GntR family
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2

Gene: PTD2_14412: Predicted regulator for proline and hydrohyproline utilization, GntR family
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Predicted regulator for proline and hydrohyproline utilization, GntR family
ypdF
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -69
score = 5.01168
sequence = ATTGTATGCAAT

Gene: PTD2_06274: Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)
 
CRON 4.
colA2
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -49
score = 5.01168
sequence = ATTGTATGCAAT

Site:
position = -32
score = 4.33388
sequence = ATTTTATTCAAT

Gene: CPS_2237: Microbial collagenase, secreted (EC 3.4.24.3)
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -179
score = 4.86675
sequence = ATTGTATACATT

Site:
position = -132
score = 4.16514
sequence = AATGTAAACAAT

Gene: PTD2_04421: Microbial collagenase, secreted (EC 3.4.24.3)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Microbial collagenase, secreted (EC 3.4.24.3)
 
CRON 5.
hypO
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1447: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
*
Alteromonadales bacterium TW-7

Site:
position = -211
score = 5.32149
sequence = ATTGTATACAAT

Gene: ATW7_13123: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = 6
score = 5.01168
sequence = ATTGTATGCAAT

Gene: PTD2_14392: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
prdP
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3777: Proline dipeptidase
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01522: Proline dipeptidase
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -115
score = 4.69346
sequence = AGTGTATACAAT

Gene: CPS_1459: Proline dipeptidase
 2
Alteromonadales bacterium TW-7

Gene: ATW7_13128: Proline dipeptidase

Gene: ATW7_02617: Proline dipeptidase
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAb0215: Proline dipeptidase
*
Pseudoalteromonas tunicata D2

Site:
position = -144
score = 3.66632
sequence = ATGTTATACAGT

Site:
position = -128
score = 3.95981
sequence = ATTGTATAATTT

Site:
position = -24
score = 5.01168
sequence = ATTGCATACAAT

Gene: PTD2_03171: Proline dipeptidase
 
Idiomarina baltica OS145

Gene: OS145_00640: Proline dipeptidase
 
Idiomarina loihiensis L2TR

Gene: IL0630: Proline dipeptidase
Proline dipeptidase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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