Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HutC - Sphingomonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Histidine utilization
Effector: cis-Urocanic acid
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Erythrobacter litoralis HTCC2594
Erythrobacter sp. NAP1
Novosphingobium aromaticivorans DSM 12444
Sphingopyxis alaskensis RB2256 9 3
Sphingobium japonicum UT26S
Sphingomonas wittichii RW1 7 2
Zymomonas mobilis subsp. mobilis ZM4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hutF
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
*
Sphingopyxis alaskensis RB2256

Site:
position = -31
score = 6.07971
sequence = ATTATGTCTAGACATAAT

Gene: Sala_1687: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
 
Sphingobium japonicum UT26S
*
Sphingomonas wittichii RW1

Site:
position = -32
score = 5.9343
sequence = ATAATGTATAGACATTAT

Gene: Swit_4634: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
 
Zymomonas mobilis subsp. mobilis ZM4
Formiminoglutamic iminohydrolase (EC 3.5.3.13)
hutC
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1686: Histidine utilization repressor, GntR family
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_4635: Histidine utilization repressor, GntR family
 
Zymomonas mobilis subsp. mobilis ZM4
Histidine utilization repressor, GntR family
 
CRON 2.
hutI
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
*
Sphingopyxis alaskensis RB2256

Site:
position = -16
score = 6.07971
sequence = ATTATGTCTAGACATAAT

Gene: Sala_1688: Imidazolonepropionase (EC 3.5.2.7)
 
Sphingobium japonicum UT26S
*
Sphingomonas wittichii RW1

Site:
position = -61
score = 5.9343
sequence = ATAATGTCTATACATTAT

Gene: Swit_4633: Imidazolonepropionase (EC 3.5.2.7)
 
Zymomonas mobilis subsp. mobilis ZM4
Imidazolonepropionase (EC 3.5.2.7)
hutH
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1689: Histidine ammonia-lyase (EC 4.3.1.3)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_4632: Histidine ammonia-lyase (EC 4.3.1.3)
 
Zymomonas mobilis subsp. mobilis ZM4
Histidine ammonia-lyase (EC 4.3.1.3)
hutG
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1690: N-formylglutamate deformylase (EC 3.5.1.68)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_4631: N-formylglutamate deformylase (EC 3.5.1.68)
 
Zymomonas mobilis subsp. mobilis ZM4
N-formylglutamate deformylase (EC 3.5.1.68)
hutU
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1691: Urocanate hydratase (EC 4.2.1.49)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_4630: Urocanate hydratase (EC 4.2.1.49)
 
Zymomonas mobilis subsp. mobilis ZM4
Urocanate hydratase (EC 4.2.1.49)
hutD
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_4629: Conserved hypothetical protein related to histidine degradation
 
Zymomonas mobilis subsp. mobilis ZM4
Conserved hypothetical protein related to histidine degradation
 
CRON 3.
omp
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
*
Sphingopyxis alaskensis RB2256

Site:
position = -61
score = 4.08662
sequence = GACCTGTATATACATTTG

Gene: Sala_2411: TonB-dependent receptor
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
TonB-dependent receptor
Caul_2357
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1

Gene: NAP1_07270: Optional hypothetical component of omp transporter
 
Novosphingobium aromaticivorans DSM 12444
 2
Sphingopyxis alaskensis RB2256

Gene: Sala_2410: Optional hypothetical component of omp transporter

Gene: Sala_2409: Optional hypothetical component of omp transporter
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Optional hypothetical component of omp transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD