Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HutC - Rhodospirillales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Histidine utilization
Effector: cis-Urocanic acid
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 16 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodospirillum rubrum ATCC 11170 6 3
Magnetospirillum magnetotacticum MS-1
Magnetospirillum magneticum AMB-1
Azospirillum sp. B510 6 2
Rhodospirillum centenum SW 5 2
Gluconacetobacter diazotrophicus PAl 5 2 2
Acetobacter pasteurianus IFO 3283-01
Gluconobacter oxydans 621H 8 4
Granulibacter bethesdensis CGDNIH1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hisC
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
*
Gluconobacter oxydans 621H

Site:
position = -20
score = 5.4726
sequence = TGGTTGTATTTACAAGTT

Gene: GOX1171: Histidinol-phosphate aminotransferase
 
Granulibacter bethesdensis CGDNIH1
Histidinol-phosphate aminotransferase
COG277 (GlcD)
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H

Gene: GOX1170: FAD linked oxidase domain protein
 
Granulibacter bethesdensis CGDNIH1
FAD linked oxidase domain protein
hutD
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H

Gene: GOX1169: Conserved hypothetical protein related to histidine degradation
 
Granulibacter bethesdensis CGDNIH1
Conserved hypothetical protein related to histidine degradation
 
CRON 2.
hutF
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -29
score = 3.13932
sequence = AGCTTGTCTATAATAAGA

Gene: Rru_A1302: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
*
Azospirillum sp. B510

Site:
position = -49
score = 3.63402
sequence = GGGTTGCCTATACTTGTA

Site:
position = -29
score = 3.66272
sequence = GTGTTGTCTATAATAGCG

Gene: AZL_c00080: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
*
Rhodospirillum centenum SW

Site:
position = -96
score = 5.14078
sequence = AACCTGTATAGACAGCCA

Gene: RC1_3235: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
*
Gluconobacter oxydans 621H

Site:
position = -96
score = 5.42363
sequence = TGGTGGTATATACAAGTC

Gene: GOX1164: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
 
Granulibacter bethesdensis CGDNIH1
Formiminoglutamic iminohydrolase (EC 3.5.3.13)
hutU
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1304: Urocanate hydratase (EC 4.2.1.49)
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03002210: Urocanate hydratase (EC 4.2.1.49)
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510

Gene: AZL_c00110: Urocanate hydratase (EC 4.2.1.49)
 
Rhodospirillum centenum SW

Gene: RC1_3236: Urocanate hydratase (EC 4.2.1.49)
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
*
Gluconobacter oxydans 621H

Site:
position = -35
score = 5.36928
sequence = TATTGGTATATACAAGTT

Gene: GOX1166: Urocanate hydratase (EC 4.2.1.49)
 
Granulibacter bethesdensis CGDNIH1
Urocanate hydratase (EC 4.2.1.49)
hutG
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1300: N-formylglutamate deformylase (EC 3.5.1.68)
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510

Gene: AZL_c00060: N-formylglutamate deformylase (EC 3.5.1.68)
 
Rhodospirillum centenum SW

Gene: RC1_3237: N-formylglutamate deformylase (EC 3.5.1.68)
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H

Gene: GOX1165: N-formylglutamate deformylase (EC 3.5.1.68)
 
Granulibacter bethesdensis CGDNIH1
N-formylglutamate deformylase (EC 3.5.1.68)
hutH
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1301: Histidine ammonia-lyase (EC 4.3.1.3)
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03002209: Histidine ammonia-lyase (EC 4.3.1.3)
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510

Gene: AZL_c00070: Histidine ammonia-lyase (EC 4.3.1.3)
 
Rhodospirillum centenum SW

Gene: RC1_3238: Histidine ammonia-lyase (EC 4.3.1.3)
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -32
score = 4.62862
sequence = CCAATGTCTATACAAGTA

Gene: Gdia_1458: Histidine ammonia-lyase (EC 4.3.1.3)
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H

Gene: GOX1167: Histidine ammonia-lyase (EC 4.3.1.3)
 
Granulibacter bethesdensis CGDNIH1
Histidine ammonia-lyase (EC 4.3.1.3)
hutI
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -92
score = 3.90288
sequence = TCTTATTATAGACAAGCT

Site:
position = -82
score = 3.19801
sequence = GACAAGCTTATACAAGAT

Gene: Rru_A1303: Imidazolonepropionase (EC 3.5.2.7)
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03000759: Imidazolonepropionase (EC 3.5.2.7)
 
Magnetospirillum magneticum AMB-1
*
Azospirillum sp. B510

Site:
position = -110
score = 3.59596
sequence = CGCTATTATAGACAACAC

Site:
position = -90
score = 3.79845
sequence = TACAAGTATAGGCAACCC

Gene: AZL_c00090: Imidazolonepropionase (EC 3.5.2.7)
*
Rhodospirillum centenum SW

Site:
position = -68
score = 5.23653
sequence = TGGCTGTCTATACAGGTT

Gene: RC1_3234: Imidazolonepropionase (EC 3.5.2.7)
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
*
Gluconobacter oxydans 621H

Site:
position = -50
score = 5.27693
sequence = GACTTGTATATACCACCA

Gene: GOX1163: Imidazolonepropionase (EC 3.5.2.7)
 
Granulibacter bethesdensis CGDNIH1
Imidazolonepropionase (EC 3.5.2.7)
hutC
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -42
score = 4.69875
sequence = GTCCTGTATAGACAAGAG

Gene: Rru_A1294: Histidine utilization repressor, GntR family
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510

Gene: AZL_c00100: Histidine utilization repressor, GntR family
 
Rhodospirillum centenum SW
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -57
score = 5.3339
sequence = TGGTTGTATAGACACCCA

Gene: Gdia_0721: Histidine utilization repressor, GntR family
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H

Gene: GOX1162: Histidine utilization repressor, GntR family
 
Granulibacter bethesdensis CGDNIH1
Histidine utilization repressor, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD