Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HutC - Rhodobacterales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Histidine utilization
Effector: cis-Urocanic acid
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 29 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 5 2
Paracoccus denitrificans PD1222 12 2
Jannaschia sp. CCS1
Rhodobacterales bacterium HTCC2654
Oceanicola granulosus HTCC2516 5 2
Loktanella vestfoldensis SKA53
Oceanicola batsensis HTCC2597
Roseovarius nubinhibens ISM 5 3
Roseovarius sp. 217 7 4
Sulfitobacter sp. EE-36
Silicibacter TM1040 6 3
Silicibacter pomeroyi DSS-3 6 2
Roseobacter sp. MED193 5 2
Hyphomonas neptunium ATCC 15444 6 2
Oceanicaulis alexandrii HTCC2633 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hutC
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516

Gene: OG2516_07757: Histidine utilization repressor, GntR family
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
*
Roseovarius nubinhibens ISM

Site:
position = -67
score = 4.02333
sequence = TCTATGTGCGTACAAATT

Gene: ISM_02745: Histidine utilization repressor, GntR family
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
*
Silicibacter pomeroyi DSS-3

Site:
position = -133
score = 4.59037
sequence = TTTATGTCCAGTCATAAA

Site:
position = -51
score = 4.02897
sequence = TCGATTTGTATACATAAA

Site:
position = -49
score = 4.33437
sequence = GATTTGTATACATAAATT

Gene: SPO2190: Histidine utilization repressor, GntR family
 
Roseobacter sp. MED193

Gene: MED193_01690: Histidine utilization repressor, GntR family
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Histidine utilization repressor, GntR family
 
CRON 2.
hutI
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -48
score = 4.84514
sequence = ATTATGTGCACACAAATT

Gene: RSP_2934: Imidazolonepropionase (EC 3.5.2.7)
*
Paracoccus denitrificans PD1222

Site:
position = -73
score = 4.39773
sequence = AATAAGTTTAGACATAGA

Site:
position = -50
score = 4.39773
sequence = AATAAGTTTAGACATAGA

Gene: Pden_0710: Imidazolonepropionase (EC 3.5.2.7)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
*
Oceanicola granulosus HTCC2516

Site:
position = -56
score = 4.48907
sequence = GTTATGTGCAGACATAAC

Gene: OG2516_07747: Imidazolonepropionase (EC 3.5.2.7)
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
*
Roseovarius nubinhibens ISM

Site:
position = -86
score = 5.69878
sequence = ATTATGTATGGACATAAT

Gene: ISM_05640: Imidazolonepropionase (EC 3.5.2.7)
*
Roseovarius sp. 217

Site:
position = -86
score = 6.19847
sequence = AATATGTATAGACATAAT

Gene: ROS217_11786: Imidazolonepropionase (EC 3.5.2.7)
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -67
score = 5.17492
sequence = CTTATGTATAGACATAAC

Gene: TM1040_3004: Imidazolonepropionase (EC 3.5.2.7)
*
Silicibacter pomeroyi DSS-3

Site:
position = -48
score = 4.33437
sequence = AATTTATGTATACAAATC

Site:
position = -46
score = 4.02897
sequence = TTTATGTATACAAATCGA

Gene: SPO2191: Imidazolonepropionase (EC 3.5.2.7)
*
Roseobacter sp. MED193

Site:
position = -71
score = 5.33833
sequence = TTTATGTCTAGACATATG

Gene: MED193_01670: Imidazolonepropionase (EC 3.5.2.7)
*2
Hyphomonas neptunium ATCC 15444

Gene: HNE_0404: Imidazolonepropionase (EC 3.5.2.7)

Site:
position = -55
score = 6.19847
sequence = ATTATGTCTATACATATT

Gene: HNE_2395: Imidazolonepropionase (EC 3.5.2.7)
*
Oceanicaulis alexandrii HTCC2633

Site:
position = 15
score = 6.22479
sequence = AATATGTATAGACATATT

Gene: OA2633_11044: Imidazolonepropionase (EC 3.5.2.7)
Imidazolonepropionase (EC 3.5.2.7)
hutH
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2935: Histidine ammonia-lyase (EC 4.3.1.3)
 
Paracoccus denitrificans PD1222

Gene: Pden_0711: Histidine ammonia-lyase (EC 4.3.1.3)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516

Gene: OG2516_07742: Histidine ammonia-lyase (EC 4.3.1.3)
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM

Gene: ISM_05635: Histidine ammonia-lyase (EC 4.3.1.3)
 
Roseovarius sp. 217

Gene: ROS217_11781: Histidine ammonia-lyase (EC 4.3.1.3)
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3005: Histidine ammonia-lyase (EC 4.3.1.3)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2192: Histidine ammonia-lyase (EC 4.3.1.3)
 
Roseobacter sp. MED193

Gene: MED193_01675: Histidine ammonia-lyase (EC 4.3.1.3)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2396: Histidine ammonia-lyase (EC 4.3.1.3)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_11049: Histidine ammonia-lyase (EC 4.3.1.3)
Histidine ammonia-lyase (EC 4.3.1.3)
hutG
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_0712: N-formylglutamate deformylase (EC 3.5.1.68)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516

Gene: OG2516_07737: N-formylglutamate deformylase (EC 3.5.1.68)
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -52
score = 4.07831
sequence = AATATGCTTAATCATATT

Gene: ROS217_15945: N-formylglutamate deformylase (EC 3.5.1.68)
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3006: N-formylglutamate deformylase (EC 3.5.1.68)
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0448: N-formylglutamate deformylase (EC 3.5.1.68)
 
Roseobacter sp. MED193

Gene: MED193_01680: N-formylglutamate deformylase (EC 3.5.1.68)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2397: N-formylglutamate deformylase (EC 3.5.1.68)
 
Oceanicaulis alexandrii HTCC2633
N-formylglutamate deformylase (EC 3.5.1.68)
COG1804 (CaiB)
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_0713: CAIB/BAIF family protein
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
CAIB/BAIF family protein
COG1960 (CaiA)
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_0714: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
hutU
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2936: Urocanate hydratase (EC 4.2.1.49)
 
Paracoccus denitrificans PD1222

Gene: Pden_0715: Urocanate hydratase (EC 4.2.1.49)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516

Gene: OG2516_07727: Urocanate hydratase (EC 4.2.1.49)
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM

Gene: ISM_05630: Urocanate hydratase (EC 4.2.1.49)
 
Roseovarius sp. 217

Gene: ROS217_11776: Urocanate hydratase (EC 4.2.1.49)
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3007: Urocanate hydratase (EC 4.2.1.49)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2193: Urocanate hydratase (EC 4.2.1.49)
 
Roseobacter sp. MED193

Gene: MED193_01685: Urocanate hydratase (EC 4.2.1.49)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2398: Urocanate hydratase (EC 4.2.1.49)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_11054: Urocanate hydratase (EC 4.2.1.49)
Urocanate hydratase (EC 4.2.1.49)
COG834 (HisJ)
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_0716: ABC amino acid transporter, periplasmic binding protein
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC amino acid transporter, periplasmic binding protein
COG765 (HisM)
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_0717: ABC amino acid transporter, permease component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC amino acid transporter, permease component
COG4160 (ArtM)
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_0718: ABC amino acid transporter, permease component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC amino acid transporter, permease component
COG1126 (GlnQ)
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_0719: ABC amino acid transporter, ATPase component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
ABC amino acid transporter, ATPase component
hutF
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -41
score = 4.84514
sequence = AATTTGTGTGCACATAAT

Gene: RSP_2933: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
*
Paracoccus denitrificans PD1222

Site:
position = -41
score = 4.39773
sequence = TCTATGTCTAAACTTATT

Site:
position = -64
score = 4.39773
sequence = TCTATGTCTAAACTTATT

Gene: Pden_0709: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
*
Oceanicola granulosus HTCC2516

Site:
position = -41
score = 4.48907
sequence = GTTATGTCTGCACATAAC

Gene: OG2516_07752: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
*
Roseovarius nubinhibens ISM

Site:
position = -95
score = 5.1679
sequence = ATTATGTCCAGACATAAC

Gene: ISM_02740: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
*
Roseovarius sp. 217

Site:
position = -42
score = 4.07831
sequence = AATATGATTAAGCATATT

Gene: ROS217_15950: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -26
score = 5.17492
sequence = GTTATGTCTATACATAAG

Gene: TM1040_3003: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2194: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
*
Roseobacter sp. MED193

Site:
position = -30
score = 5.33833
sequence = CATATGTCTAGACATAAA

Gene: MED193_01665: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
*
Hyphomonas neptunium ATCC 15444

Site:
position = -40
score = 6.19847
sequence = AATATGTATAGACATAAT

Gene: HNE_2394: Formiminoglutamic iminohydrolase (EC 3.5.3.13)
 
Oceanicaulis alexandrii HTCC2633
Formiminoglutamic iminohydrolase (EC 3.5.3.13)
hutG2
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_11059: Formiminoglutamase (EC 3.5.3.8)
Formiminoglutamase (EC 3.5.3.8)
hutC
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2932: Histidine utilization repressor, GntR family
 
Paracoccus denitrificans PD1222

Gene: Pden_0708: Histidine utilization repressor, GntR family
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
*2
Roseovarius sp. 217

Gene: ROS217_15955: Histidine utilization repressor, GntR family

Site:
position = -187
score = 6.19847
sequence = ATTATGTCTATACATATT

Gene: ROS217_11791: Histidine utilization repressor, GntR family
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -119
score = 5.25013
sequence = AATATGTAGGTACATATT

Gene: TM1040_3642: Histidine utilization repressor, GntR family
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2393: Histidine utilization repressor, GntR family
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -75
score = 6.22479
sequence = AATATGTCTATACATATT

Gene: OA2633_11039: Histidine utilization repressor, GntR family
Histidine utilization repressor, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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