Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PrpR - Desulfuromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Methylcitrate utilization
Effector: 2-methylcitrate
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Geobacter metallireducens GS-15 5 1
Geobacter sulfurreducens PCA
Geobacter uraniumreducens Rf4
Geobacter sp. FRC-32 3 1
Geobacter sp. M21 2 1
Geobacter lovleyi SZ
Pelobacter propionicus DSM 2379
Pelobacter carbinolicus str. DSM 2380
Desulfuromonas acetoxidans DSM 684
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
prpR
*
Geobacter metallireducens GS-15

Site:
position = -85
score = 4.83251
sequence = AGTGTCGACACT

Site:
position = -12
score = 4.12632
sequence = GGTGTCGACAAA

Gene: Gmet_1121: Propionate catabolism transcriptional regulator, GntR family
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
*
Geobacter sp. FRC-32

Site:
position = -11
score = 4.37224
sequence = GGTGTCGACACT

Site:
position = -84
score = 4.83251
sequence = AATGTCGACACT

Gene: Geob_0515: Propionate catabolism transcriptional regulator, GntR family
*
Geobacter sp. M21

Site:
position = -74
score = 4.13322
sequence = ACTGTTGACAGT

Site:
position = -14
score = 4.81894
sequence = GGTGTCGACAAT

Gene: GM21_0841: Propionate catabolism transcriptional regulator, GntR family
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
Propionate catabolism transcriptional regulator, GntR family
prpB
 
Geobacter metallireducens GS-15

Gene: Gmet_1122: Methylisocitrate lyase (EC 4.1.3.30)
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4

Gene: Gura_0071: Methylisocitrate lyase (EC 4.1.3.30)
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
Methylisocitrate lyase (EC 4.1.3.30)
prpD
 
Geobacter metallireducens GS-15

Gene: Gmet_1123: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4

Gene: Gura_0073: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
2-methylcitrate dehydratase (EC 4.2.1.79)
prpC
 
Geobacter metallireducens GS-15

Gene: Gmet_1124: 2-methylcitrate synthase (EC 2.3.3.5)
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4

Gene: Gura_0072: 2-methylcitrate synthase (EC 2.3.3.5)
 
Geobacter sp. FRC-32

Gene: Geob_0514: 2-methylcitrate synthase (EC 2.3.3.5)
 
Geobacter sp. M21

Gene: GM21_2561: 2-methylcitrate synthase (EC 2.3.3.5)
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
2-methylcitrate synthase (EC 2.3.3.5)
ach
 
Geobacter metallireducens GS-15

Gene: Gmet_1125: Acetyl-CoA hydrolase (EC 3.1.2.1)
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Geobacter sp. FRC-32

Gene: Geob_0513: Acetyl-CoA hydrolase (EC 3.1.2.1)
 
Geobacter sp. M21

Gene: GM21_0842: Acetyl-CoA hydrolase (EC 3.1.2.1)
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
Acetyl-CoA hydrolase (EC 3.1.2.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD