Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PrpR - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Methylcitrate utilization
Effector: 2-methylcitrate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 6 1
Pseudomonas entomophila L48 6 1
Pseudomonas putida KT2440 6 1
Pseudomonas syringae pv. tomato str. DC3000 2 1
Pseudomonas fluorescens Pf-5 4 2
Pseudomonas mendocina ymp 5 1
Pseudomonas stutzeri A1501 5 1
Azotobacter vinelandii AvOP 5 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
prpR
*
Pseudomonas aeruginosa PAO1

Site:
position = -33
score = 4.68522
sequence = ATTGTCGACACA

Site:
position = -96
score = 5.82454
sequence = ATTGTCGACAAT

Gene: PA0797: Propionate catabolism transcriptional regulator, GntR family
*
Pseudomonas entomophila L48

Site:
position = -13
score = 4.81894
sequence = GGTGTCGACAAT

Site:
position = -86
score = 5.82454
sequence = ATTGTCGACAAT

Gene: PSEEN1901: Propionate catabolism transcriptional regulator, GntR family
*
Pseudomonas putida KT2440

Site:
position = -12
score = 4.81894
sequence = GGTGTCGACAAT

Site:
position = -85
score = 5.82454
sequence = ATTGTCGACAAT

Gene: PP2333: Propionate catabolism transcriptional regulator, GntR family
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -31
score = 4.81894
sequence = GGTGTCGACAAT

Site:
position = -104
score = 5.29278
sequence = ATTGTCGACAGT

Gene: PSPTO2286: Propionate catabolism transcriptional regulator, GntR family
*
Pseudomonas fluorescens Pf-5

Site:
position = -12
score = 4.81894
sequence = GGTGTCGACAAT

Site:
position = -85
score = 5.82454
sequence = ATTGTCGACAAT

Gene: PFL_1860: Propionate catabolism transcriptional regulator, GntR family
*
Pseudomonas mendocina ymp

Site:
position = -13
score = 4.81894
sequence = GGTGTCGACAAT

Site:
position = -87
score = 5.82454
sequence = ATTGTCGACAAT

Gene: Pmen_2079: Propionate catabolism transcriptional regulator, GntR family
*
Pseudomonas stutzeri A1501

Site:
position = -13
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -88
score = 4.81894
sequence = GGTGTCGACAAT

Gene: PST_2033: Propionate catabolism transcriptional regulator, GntR family
*
Azotobacter vinelandii AvOP

Site:
position = -12
score = 5.82454
sequence = ATTGTCGACAAT

Site:
position = -85
score = 5.82454
sequence = ATTGTCGACAAT

Gene: Avin_23200: Propionate catabolism transcriptional regulator, GntR family
Propionate catabolism transcriptional regulator, GntR family
prpB
 
Pseudomonas aeruginosa PAO1

Gene: PA0796: Methylisocitrate lyase (EC 4.1.3.30)
 
Pseudomonas entomophila L48

Gene: PSEEN1902: Methylisocitrate lyase (EC 4.1.3.30)
 
Pseudomonas putida KT2440

Gene: PP2334: Methylisocitrate lyase (EC 4.1.3.30)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2287: Methylisocitrate lyase (EC 4.1.3.30)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_1861: Methylisocitrate lyase (EC 4.1.3.30)
 
Pseudomonas mendocina ymp

Gene: Pmen_2080: Methylisocitrate lyase (EC 4.1.3.30)
 
Pseudomonas stutzeri A1501

Gene: PST_2034: Methylisocitrate lyase (EC 4.1.3.30)
 
Azotobacter vinelandii AvOP

Gene: Avin_23210: Methylisocitrate lyase (EC 4.1.3.30)
Methylisocitrate lyase (EC 4.1.3.30)
prpC
 
Pseudomonas aeruginosa PAO1

Gene: PA0795: 2-methylcitrate synthase (EC 2.3.3.5)
 
Pseudomonas entomophila L48

Gene: PSEEN1903: 2-methylcitrate synthase (EC 2.3.3.5)
 
Pseudomonas putida KT2440

Gene: PP2335: 2-methylcitrate synthase (EC 2.3.3.5)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2288: 2-methylcitrate synthase (EC 2.3.3.5)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_1862: 2-methylcitrate synthase (EC 2.3.3.5)
 
Pseudomonas mendocina ymp

Gene: Pmen_2081: 2-methylcitrate synthase (EC 2.3.3.5)
 
Pseudomonas stutzeri A1501

Gene: PST_2035: 2-methylcitrate synthase (EC 2.3.3.5)
 
Azotobacter vinelandii AvOP

Gene: Avin_23220: 2-methylcitrate synthase (EC 2.3.3.5)
2-methylcitrate synthase (EC 2.3.3.5)
acnD
 
Pseudomonas aeruginosa PAO1

Gene: PA0794: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Pseudomonas entomophila L48

Gene: PSEEN1905: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Pseudomonas putida KT2440

Gene: PP2336: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2289: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_1863: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Pseudomonas mendocina ymp

Gene: Pmen_2082: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Pseudomonas stutzeri A1501

Gene: PST_2036: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Azotobacter vinelandii AvOP

Gene: Avin_23230: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
prpF
 
Pseudomonas aeruginosa PAO1

Gene: PA0793: Aconitase accessory protein PrpF
 
Pseudomonas entomophila L48

Gene: PSEEN1906: Aconitase accessory protein PrpF
 
Pseudomonas putida KT2440

Gene: PP2337: Aconitase accessory protein PrpF
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2290: Aconitase accessory protein PrpF
 
Pseudomonas fluorescens Pf-5

Gene: PFL_1864: Aconitase accessory protein PrpF
 
Pseudomonas mendocina ymp

Gene: Pmen_2083: Aconitase accessory protein PrpF
 
Pseudomonas stutzeri A1501

Gene: PST_2037: Aconitase accessory protein PrpF
 
Azotobacter vinelandii AvOP

Gene: Avin_23250: Aconitase accessory protein PrpF
Aconitase accessory protein PrpF
prpD
 
Pseudomonas aeruginosa PAO1

Gene: PA0792: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Pseudomonas entomophila L48

Gene: PSEEN1907: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Pseudomonas putida KT2440

Gene: PP2338: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5

Gene: PFL_1865: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
2-methylcitrate dehydratase (EC 4.2.1.79)
 
CRON 2.
acnB
 
Pseudomonas aeruginosa PAO1

Gene: PA1787: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Pseudomonas entomophila L48

Gene: PSEEN1908: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Pseudomonas putida KT2440

Gene: PP2339: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3752: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
*
Pseudomonas fluorescens Pf-5

Site:
position = -113
score = 4.40059
sequence = ATTGTCGGTAAT

Gene: PFL_2633: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Pseudomonas mendocina ymp

Gene: Pmen_2578: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Pseudomonas stutzeri A1501

Gene: PST_2046: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
 
Azotobacter vinelandii AvOP

Gene: Avin_23470: Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD